NONHSAT144894
Revision as of 03:15, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144894 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2607 nt |
Genomic location |
chr17+:1943966..1946718 |
Exon number |
2 |
Exons |
1943966..1944915,1945062..1946718 |
Genome context |
|
Sequence |
000001 GAAGGCTGGA GCCAACAGGA ATTGCTTCCA TGGTCATGGA ATTTTACTGT TTACAGAGAC CTCCCTGGGA GGGCTAACTG 000080
000081 GGTCATACCT GCTTTGGGAC TTTGGGGCTC AGAGGCAATG GCAACATCAC ATTTGTCCTT GTGAGATGAG TTTGAGCGGT 000160 000161 GGCTGACACC TGCCCTGTAC CAGGtactaa atgtggttct ggggatacta tcaccagtga gctgccctgg aaagctcatt 000240 000241 gtcggcagag gaaacaggag aaaacacgca acaatacaGT ATTCCAAACA GCAGTGGGTC ACTGTCTTTA CTTTAGGATT 000320 000321 CATAAAGCCT GTTAATGAAT GGGTGTGCTG GGGGCACTGT CATGTTCTTC AGCATGCTGC CTGGGCGACG AGGAGGCCCT 000400 000401 TCCTAGGGTC TGACCTGGCT TCCCTTCCCA GGTGGGTGCA GGTGGCATGT CCACGTCTCT CCATTGACTG GGGCACAGCC 000480 000481 TTCCCCAAGC CGCTGCTGAC ACCCTATGAG GTAACACCAA GCTCTGGGAG AGAGTGGGCT TTGGACGTGG TTCTCAAAGG 000560 000561 TGAGGTCTGG AGTGGAGTGG GGTGGGTGGG CAGCACTTCg ttatgttcgt agattccgga gtctgtctcg atttctccag 000640 000641 cggagtcact tcctagctgt gtagccttag gcaaggccct gaaccacaca gttcccttct gtggcagggg acagtgtgcc 000720 000721 cttcacaggc cgtcgtgagg actgaattca gtaatccaGG GGCAGAAAAA CACTGGCAGA TGTTATTGTC CCTCCCTCCC 000800 000801 CTCCCCTAGG CGGCCGTGGC TCTGAGGGAC ATTTCCTGGC AGCAGCCCTA CCCGATGGAC TTCTACGCTG GCAGCTCCTT 000880 000881 GGGGCCCTGG ACGGTGAACC ACGGCCAGGA CCGCCGTCCC CAcgccccgg gccggcccgc gcgggggAAG GTGCAGGAGG 000960 000961 GGTCCGCGCG TCCCCCTTCG GCCGTGGCTT GCGAGGACTG CAGCTGCAGG GACGAGAAGG TGGCGCCGCT GGCTCCTTGA 001040 001041 CGCGCTCCCG GGCCTCAGGT ATCAGCCCCC GCTCTGGGTG CGCCCCGCCT TTTGCCGTTG TCATGGGAAC GCCTTGGCGC 001120 001121 TCCGAGGCCC GCCCTCGGGG CGGTGCTGAC GTTCGGTTCC GCCCCGTGCA TTGTGCTTCC GCTCGGGGAA AGACCGCTTC 001200 001201 CGGTGCTTCC GTCGCTCCTT GCCGGGCATA ATGGCCGCGC AGCGACCCCT GCGGGTCCTG TGCCTGGCGG GCTTCCGGCA 001280 001281 GAGCGAGCGG GGCTTCCGTG AGAAGACCGG GGCGCTGAGG AAGGCGCTGC GGGGTCGCGC CGAGCTCGTG TGCCTCAGCG 001360 001361 GCCCGCACCC GGTCCCCGAC CCCCCGGGCC CCGAGGGCGC CAGATCAGAC TTCGGTGAGA CAAGCCCCGC TCCGGAAACG 001440 001441 CACTCAGTTT CCTCCATCTT GTTTCGTCCC CCTCGACACC CTTCAGCATC CCCCACCCTG CGTCCACCCG CATTCCTCCC 001520 001521 ACCCAGTCCA CACCCTTCAT TTCTCGCGAC CCATACCCTC TTTGCTCAAA CTGCAGCCTG TCCTCCCAGG CTTCCGCCTT 001600 001601 CACCGTCTTC CTCCGCTGTC TCCTGTTCAG GCCAATCCAC TCATTTCCCC CCTCTCATTT CCCCCAGACT TTTGCCTCGA 001680 001681 TTCCCTTTTT CTCTCTGTCA TCTCGAACCC TCCTGCCCTT TCTCATTTCT TTCCTTCCTG GAGCCTCCCA TGCCCTAATC 001760 001761 CCATCCTTTT TCCTCATATC GCTGTAGGGT CCTGCCCTCC GGAGGAGCAG CCTCGAGGCT GGTGGTTTTC AGAGCAGGAG 001840 001841 GCCGACGTTT TCTCCGCATT GGAAGAGCCC GCCGTCTGCA GGGGCCTGGA GGAATCACTG GGGATGGTGG CACAGGCACT 001920 001921 GAACAGGCTG GGGCCTTTTG ACGGCCTTCT TGGTTTCAGC CAAGGGGCTG CGCTAGCAGC CCTTGTGTGT GCCCTGGGCC 002000 002001 AGGCAGGCGA TCCCCGCTTC CCCTTGCCAC GGTTTATCCT CTTGGTGTCT GGTTTCTGTC CCCGGGGCAT TGGGTTCAAG 002080 002081 GAATCCATCC TGCAAAGGCC CTTGTCATTG CCTTCGCTCC ATGTTTTTGG GGACACTGAC AAAGTCATCC CCTCTCAGGA 002160 002161 GAGTGTGCAA CTGGCCAGCC AATTTCCCGG AGCCATCACC CTCACCCACT CTGGTGGCCA CTTCATTCCA GCAGCTGCAC 002240 002241 CCCAGCGTCA GGCCTACCTC AAGTTCTTGG ACCAGTTTGC AGAGTGAAAG ATCAAGAAAT GTCTCTGCTC CTACATCCAG 002320 002321 CTCCTCTAGG GGCAGCCTCC GTCATCCATG CCCTCCCAGG ACCCTCCACT CACTGCTGTG AGTGCGCCTC ACCAGAACCA 002400 002401 GTTAAGAGAC AACTATCAAT TCTTGAGACC CAAATTATAA GGGCCCTGCC CTGTACTGAA GAAAAGGGGA GCACAAGGCC 002480 002481 TTAATGGACA TTGACTTGTG AAAACGCAAA CATGAATATG GTTGGAGAGC CCTGGATTAG GAGGGTGACA TGGGGAAGGC 002560 002561 AGAGGCTGGC ACCATGGTGA CTGCCACATA ATAAAGTGGT GATTTGG |
Predicted Small Protein
Name | NONHSAT144894_smProtein_2120:2380 |
Length | 87 |
Molecular weight | 9427.5561 |
Aromaticity | 0.0581395348837 |
Instability index | 91.7476744186 |
Isoelectric point | 11.7826538086 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0246815442894 |
Amino acid sequence | MFLGTLTKSSPLRRVCNWPANFPEPSPSPTLVATSFQQLHPSVRPTSSSWTSLQSERSRN VSAPTSSSSRGSLRHPCPPRTLHSLL |
Secondary structure | LEEEEELLLLLLEEELLLLLLLLLLLLLLLEEEELHHHLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |