NONHSAT145134
Revision as of 03:16, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145134 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
726 nt |
Genomic location |
chr17+:4859462..4860424 |
Exon number |
3 |
Exons |
4859462..4859976,4860126..4860184,4860273..4860424 |
Genome context |
|
Sequence |
000001 CTCACCATAG CCTGCCTCTG CCCCAGCTCT GCCCACTCCA GCTACAGTCT TACCCACCAA CTCCAAGCTT ACCTTTCCCC 000080
000081 TGGCACCTGA CTTACCCACA CCTTGATCTC AAGACTTTGT TTGACTAATC CTTGGCCTGA CTCCAAGAGC TTTGCCCCTG 000160 000161 TGGCTCTGTC ATGACCCCCC ACCCCCAGCC CACACCATTC CTCTCTCAGA TTCCGCTGTT CTCAGCAGCA TCTCAAGAGC 000240 000241 CCGAAATCAA GATAAGTCTT TTCCTCTCCT ACTTCCCAAA GAACTTAGTC ACTGCCCTCC CTGCAGAGTG CTTGCTACCC 000320 000321 AAAACAGAAG GGAGAGGCCC CACCCAACCC CTGCTTTCCC ACTGAGGAGG TTCTAGAAGG CCACATCAAA TGTCCTCTCC 000400 000401 ACTCAGGTGC AAACTGGCTC AGTCTAATGG CTGGGGGGTG ATGGTGAGCC ACCGCTCTGG GGAGACTGAG GACACATTCA 000480 000481 TTGCTGACCT TGTGGTGGGG CTCTGCACAG GACAGATCAA GACTGGCGCC CCCTGCCGCT CGGAGCGTCT GGCCAAATAC 000560 000561 AACCAACTCA TGAGGATCGA GGAGGCTCTT GGGGACAAGG CAATCTTTGC TGGACGCAAG TTCCGTAACC CGAAGGCCAA 000640 000641 GTGAGAAGCT GGAGGCTCCA GGACTCCACT GGACAGACCC AGGTCTTCCA GACCTGCTTC CTGAAATAAA CACTGGTGCC 000720 000721 AACCAA |
Predicted Small Protein
Name | NONHSAT145134_smProtein_389:643 |
Length | 85 |
Molecular weight | 9241.6256 |
Aromaticity | 0.0595238095238 |
Instability index | 50.3607142857 |
Isoelectric point | 9.65985107422 |
Runs | 15 |
Runs residual | 0.0445859872611 |
Runs probability | 0.0315609727375 |
Amino acid sequence | MSSPLRCKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQL MRIEEALGDKAIFAGRKFRNPKAK |
Secondary structure | LLLHHHEEHHHLLLLEEEEELLLLLLHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHH HHHHHHLLLLLEELLLEELLLLLL |
PRMN | - |
PiMo | - |