NONHSAT145394
Revision as of 03:17, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145394 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2149 nt |
Genomic location |
chr17+:7461609..7464925 |
Exon number |
4 |
Exons |
7461609..7462614,7463366..7463484,7463667..7463805,7464041..7464925 |
Genome context |
|
Sequence |
000001 CCGGAACCCT GTGTGCTGGG GAGGAATCCC GCAGTGGCCG GGGGGCTTGA GGCCGCTGCT TTGTCTCTTC GTCCAGAGCC 000080
000081 TTATGTAAGA GCTTTTCTCG GGAAACAGGA AGTCCTGCTT GCCAATTTCA GCACAGGGAG TAGTGCAGGC CTTATTCCAA 000160 000161 CACACCCGGC CCAGCCTTAA CCCCAGAACT CAGCCAGTTT CTTGCTTCCG TGCCCCTGGT TCTCCTCCCC ATCGAGCCCA 000240 000241 CCCCTCCTTT CCCACCTTCA GTCACCCCTA GTGAACTGCC CCAGCGATCT CTGCTGTGCT TGACCCCGAG GGTCTTCCAC 000320 000321 CCTCGCCCTG ACCCTGGACA CTGCCCAGCT TGGCCCCCCA TCCTGCTCCT GGCACAATGC CCTCTAGCCA GCCAACCTTC 000400 000401 CCTCCCCCAA CCCTGGGGCC GCCCCAGGGT TCCTGCGCAC TGCCTGTTCC TCCTGGGTGT CACTGGCAGC CCTGTCCTTC 000480 000481 CTAGAGGGAC TGGAACCTAA TTCTCCTGAG GCTGAGGGAG GGTGGAGGGT CTCAAGGCAA CGCTGGCCCC ACGACGGAGT 000560 000561 GCCAGGAGCA CTAACAGTAC CCTTAGCTTG CTTTCCTCCT CCCTCCTTTT TATTTTCAAG TTCCTTTTTA TTTCTCCTTG 000640 000641 CGTAACAACC TTCTTCCCTT CTGCACCACT GCCCGTACCC TTACCCGCCC CGCCACCTCC TTGCTACCCC ACTCTTGAAA 000720 000721 CCACAGCTGT TGGCAGGGTC CCCAGCTCAT GCCAGCCTCA TCTCCTTTCT TGCTAGCCCC CAAAGGGCCT CCAGGCAACA 000800 000801 TGGGGGGCCC AGTCAGAGAG CCGGCACTCT CAGTTGCCCT CTGGTTGAGT TGGGGGGCAG CTCTGGGGGC CGTGGCTTGT 000880 000881 GCCATGGCTC TGCTGACCCA ACAAACAGAG CTGCAGAGCC TCAGGAGAGA GGTGAGCCGG CTGCAGGGGA CAGGAGGCCC 000960 000961 CTCCCAGAAT GGGGAAGGGT ATCCCTGGCA GAGTCTCCCG GAGCAGATGA CTCCGATGTG ACAGAGGTGA TGTGGCAACC 001040 001041 AGCTCTTAGG CGTGGGAGAG GCCTACAGGC CCAAGGATAT GGTGTCCGAA TCCAGGATGC TGGAGTTTAT CTGCTGTATA 001120 001121 GCCAGGTCCT GTTTCAAGAC GTGACTTTCA CCATGGGTCA GGTGGTGTCT CGAGAAGGCC AAGGAAGGCA GGAGACTCTA 001200 001201 TTCCGATGTA TAAGAAGTAT GCCCTCCCAC CCGGACCGGG CCTACAACAG CTGCTATAGC GCAGGTGTCT TCCATTTACA 001280 001281 CCAAGGGGAT ATTCTGAGTG TCATAATTCC CCGGGCAAGG GCGAAACTTA ACCTCTCTCC ACATGGAACC TTCCTGGGGT 001360 001361 TTGTGAAACT GTGATTGTGT TATAAAAAGT GGCTCCCAGC TTGGAAGACC AGGGTGGGTA CATACTGGAG ACAGCCAAGA 001440 001441 GCTGAGTATA TAAAGGAGAG GGAATGTGCA GGAACAGAGG CGTCTTCCTG GGTTTGGCTC CCCGTTCCTC ACTTTTCCCT 001520 001521 TTTCATTCCC ACCCCCTAGA CTTTGATTTT ACGGATATCT TGCTTCTGTT CCCCATGGAG CTCCGAATTC TTGCGTGTGT 001600 001601 GTAGATGAGG GGCGGGGGAC GGGCGCCAGG CATTGTCCAG ACCTGGTCGG GGCCCACTGG AAGCATCCAG AACAGCACCA 001680 001681 CCATCTAGCG GCCGCTCGAG GGAAGCACCC GCCGGTTGGC CGAAGTCCAC GAAGCCGCCC TCTGCTAGGG AAAACCCCTG 001760 001761 GTTCTCCATG CCACACCTCT CTCCAGGTGC CCTCTGCCTC TTCACCCCAC AAGAAGCCTT ATCCTACGTC CTTCTCTCCA 001840 001841 TCTATCGGAC CCCAGTTTCC ATCACTATCT CCAGAGATGT AGCTATTATG CGCCCGTCTA CAGGGGGTGC CCGACGATGA 001920 001921 CGGTGCCTTC GCAGTCAAAT TACTCTTCGG GTCCCAAGGT TTGGCTTTCA CGCGCTCCAT TGCCCCGGCG TGGCAGGCCA 002000 002001 TTCCAAGCCC TTCCGGGCTG GAACTGGTGT CGGAGGAGCC TCGGGTGTAT CGTACGCCCT GGTGTTGGTG TTGCCTCACT 002080 002081 CCTCTGAGCT CTTCTTTCTG ATCAAGCCCT GCTTAAAGTT AAATAAAATA GAATGAATGA TACCCCGGC |
Predicted Small Protein
Name | NONHSAT145394_smProtein_1916:2086 |
Length | 57 |
Molecular weight | 6164.1607 |
Aromaticity | 0.0892857142857 |
Instability index | 80.6375 |
Isoelectric point | 11.8822631836 |
Runs | 9 |
Runs residual | 0.00741608118657 |
Runs probability | 0.0293921372353 |
Amino acid sequence | MTVPSQSNYSSGPKVWLSRAPLPRRGRPFQALPGWNWCRRSLGCIVRPGVGVASLL |
Secondary structure | LLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLHHHLLLLEEEELLLLEEEEL |
PRMN | - |
PiMo | - |