NONHSAT145547

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT145547

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3927 nt

Genomic location

chr17+:8367554..8371480

Exon number

1

Exons

8367554..8371480

Genome context

Sequence
000001 TATAGCTCTG GAACCTTTTT TTTACATATA TGATTCCCAG ATCTGTATCT TCAAGCCTGC CCCATCACTC TTCCTTCAGT 000080
000081 CCTGTCTTGT GCACTGGGAC ATTGCCCTGT GGCTCTTTGC TGCTCCCTGA AACTGAATCT GTTGAATATA GAGTCTCTTC 000160
000161 TCTTGCAAAT CTTTTCCCCA TGCACAGCTT TGCAGGCCTC TGAAGGACTT CACTAGACCT GTCATCCCAT CTAGAAGGCC 000240
000241 AGCTTTCTTC TCTCTCTGTT CTTTAACTTT CTACTTTTTG AGTCAGGAGA GAGGCGCTAG GTGAGACCCT GGTGGATTGA 000320
000321 TGTTCCCTCT CTACTCCACC CACCTTCACA TTAAGCGTTC CATTTCTGCC CATGTAGAAA TTTACCGGTT CTCTCTTTAT 000400
000401 AGTCTGGGCT GCACCACTTA CTTTTCCCAT TAGAGCCGGC CTGCATTGGA GTGCCGAAGT GGTTGCTTCT GAGGGCTGCT 000480
000481 AGGTGGCCTC TGACCAGGAG GAGACTAGAA AAGGGTCCTG GCCTGGGCAT CTGGAGGCAG CTGTGGCCCC GACTTCCCCA 000560
000561 TCAGTGGCTC ACTAGGTGAG CCTAGGCTAA TGGCTGGACC TTCTCTTGCT TTGGTTGTCT TGGCAGTGGA ACAGTGGGAT 000640
000641 GAACCTGTTG TTCCTTACGG TGCACTTGAA AATGCCAGAA TCCCATCCTC AACCTGCTTG AGGAGCCATC TCCTAGTTGC 000720
000721 TGCTTTTGTA CACCCCCGTG GCCCAGGTGC CAGATTCTTC TTGGCATCCA ATGGTGCTCC CTTTCTGCTG GGTTCCGGGC 000800
000801 ACTGTCTGCA GTACAGGTTT AGGGGCTTGC CTGCCACTGT GATGTGTGAG GCCAGGAATC TGAGGTTCAC ACGTGCTGAG 000880
000881 AGCTGCAGGC ATTTGTGGGG CCTGCCTGGT TGTCCCTGAG GTTTCTAGGA GAAGCAGGTG TCAGGGACTC TGGGACTAGC 000960
000961 CAGACAGATG GAGCCTATTA TATGAGGGCT ACCGTGGCAA ATAGGATATG GCCTTGGCCC CAGAAGAGGC ACAGGCCTGT 001040
001041 GACCTTGGGA GAGTGGGAAG GATGATTTCA AACTTGCAAA TGTGTTGAAG CTCAAAAATC AGACCTAACC CAGTGAGGAA 001120
001121 AGAGACAATC TGGCTGTTTG TCGTCGAAGT AGGACAGTGT GCAACAGGGA GAAATGACAT TTGTCAGAGC CTTTCTCCTG 001200
001201 GGGCTCTTGG TCTCTGTATG CGTGGTTGGA ATTTAAACTC CACATATGTA CTCTGAGTTT AGTTTCTTTA GACATGAACT 001280
001281 TTGTTTCTTC CAAGTAGGCA GGGACTATTT GTCAAGTCTC TGCATGCCTG TTTGTCTGTG AGGTTATCCT CACCCCGTCA 001360
001361 GTGTACGAAA CAGCTGTCTC TGCAGGGAGT GTGTGTCGGC ATTTTTTTTT TTTAAGGAGA ACCTCTCTCC ATGAGTCTGT 001440
001441 ATTTAGCTCC CTGGAGCCGT CTGATGAGTA GGTGGGGGCA GTAGTGGGCA GGTGTGGTGC AGTGTGGCCC CTTGTCGTAG 001520
001521 TTGGCTTTAT CTCCCAAATT GCTAGTGGGA CAAATTTTCC TAGGAAGCGT TTCAAGGTGG AAAGGCTGAA GTGGCTCCTG 001600
001601 AGAGAGGTTC CAGGCTGCAC ACTCCCTCCC CCTCTTGCTG CTTCCTGTGG CTGCGCTGCA TGGTGCGTGA GGGGGATGCT 001680
001681 TGGGGGGCTC CCTGCATCGC TGGGCTCTGG GTGCGTGATG GGGACGCTGG GGGGCTCCCT GTGTCGCTGG GCTCCGGGTG 001760
001761 CTGGGTCCTG GCTGCAGGCT ATTGGGTTGG GCTGGGCTGT CTGCACACGA GTCTGCGTTG AAAAGCCTAC TCATCTGGCG 001840
001841 TTGCTTGCTA AACAATTTTT AAAAGGTTAT TTTTCTCCAC CTTATTAAGA TATTCGTGTA TTAATACATT ATATTTGGAA 001920
001921 AATGTAAGGA GATTTGGAAA ATGATTAAAA AAGGATAAAG TAGTAAACAA AATTCACCCA CAGCCCAGAG GGAAGAAAAG 002000
002001 TAACGATTCT TAAATTTTCT TTTTATGATA TATATGATCC tatgtacata tatgttggtg tgtgtatata tatatgtgta 002080
002081 tgcgtatata taatgtatgt atatatacat ttatTTATAC ACACTCCCCC TCTGTCCCTG CTTTGTGGAT TTAGCTGCAT 002160
002161 GGATAGTAAT GTCTATCTAA GGGGCTATAG TCTAGAATCT AGAATATATA CTATTTGCTT TTTTTTCTTT CATatcattg 002240
002241 aatctacaga gtttggtaac ctgcatcttt ttccacttag tgttagttac attctgaata ttttcccatg ctattaaaaa 002320
002321 acttgtggaa tgtgttttta atggctgtgc aatatcttat tgttcagttg taccattatt tatttaacta gttccctatt 002400
002401 gccaggcatt tagACCTGCT TTATGGGGAA AGAATCAGGA CTGTGGCTTC CGTGGCCAGT GTGCGGCAGT TGCCAAACAG 002480
002481 GTCATGTGGT CCTGGTTCCC CAGGATTCCC AAAGGCTCAA TTCTCTAACC AGCTGGTGCT TTCCAGGCAG CCAGTGCCCC 002560
002561 TTGGGCCATC AGGACCCTAC AGCCTGCGAG GAATAGTTTT AGAAAGCAGA TTAATTTCCT ATTGTGTGTG AGTGATTTTA 002640
002641 AATGAGTTTT TCGTTTCCCC TTTCTTCCCT TCTGTGCTCT GGTTGCTCCC ACAGGGCAGT AAACGGCTTT GACCCCGCTC 002720
002721 CTCCTCCTCC TGGTCTGGGC TCCTCGCGTC CATCGTCAGC GCCGGGTATG CTGCCTCTCA GTGTGTGAGT GCCTAGCCTC 002800
002801 CAGGTGGGGG CTCCTGCCCT CCTCCAACAA CCCAGGACAC CCACGCCTCA CCCCTCGGTG CCTGGGCCCA GCCCCGTGCC 002880
002881 CCTCCGTCTG CCTCCGCACG GCTGGCAGAG GGCAGGCTGC ATGCAGTGGC GGCTACTGGG CCCTGCCCAG CCCCGGAACT 002960
002961 CTGCGCGATA TCAATACTGG CTATTTTCTC TTCTCGCCGT AGTGCCGTTG GTTTCACATG ATTGCACTTT TGTGGGTCGC 003040
003041 AAGGTGATAC ATACGTGTAT TACTTGGTCA CTGGATGCAG AAGTACCCAT TCATCACACC TGCCCCATAG CCCCCACTCT 003120
003121 GCTGTACTGA TAGGATTTAG TTGTGTTTTA GGACATTGCA AATCTTCTAG AAGTTCTCCC CCAAATCAGG TCAATGTGTG 003200
003201 CCCTCCTGAG CTCCCACCCA GGCATCTCCA GTGCTCATGA TCATGTGTCC CCCAACTCCA CCCCTCACAG TTTGGGCCTG 003280
003281 TTTCTGGCAA AGAGTCAGGA AGGTTACTGA ATTAGGGAAC ATTTTCTGCA CCTTCTGATT TTACTTAAGC AGCTACCATT 003360
003361 CCATGGACTT GCCTCCCAGA GCAGCACAAT GCCCGTCTGA GCCCCACGTG GCAGGAGCCT CTGGGACGGG GCACACACAG 003440
003441 GCCCAGCCTC TGTGCTGTCT CCTCCTCCGT GCGCCTCAGA CTCGGGGTGA GGGAGGCGGG CAGCCTCTCG CCAGCCTTCC 003520
003521 CGTCCTTCAG TTCAACGACA TCTTTGGAGT GTTTTTGTTT TCTCTTCCAA GGGCCGTCCC GTTGTGTTAG GAAGGGTGAG 003600
003601 TGGCTGGTTC CAGGGTGGGC CGGTGCCAGC TCCGGGGTGG ACTGAACAGC GGCGGCTGTC CCTGTGCATC CTTTGATTAC 003680
003681 TCTCATGCTG CATTTACTGT TTACATTTGT TTTATTGTAC ATAGGTTTGT AAACATTATT GCCTGAGATA TTTGTATATA 003760
003761 ACTTGGGCTT TGTAGCTTTT ATTTATTCAG AACGCATACG GCATGTTAAT GACTCTGATG GTGTCCTCCT CTGGGCAGCT 003840
003841 GTATAGGATC ATCATGTGGT TACAAAAAAT ACTTCCCTCA AAAAAATTCT TTTAATGTGG AAACAATAAA TTTCACAGAA 003920
003921 AAAAAGG
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Predicted Small Protein

Name NONHSAT145547_smProtein_3362:3589
Length 76
Molecular weight 7823.0018
Aromaticity 0.0533333333333
Instability index 47.0266666667
Isoelectric point 6.68572998047
Runs 9
Runs residual 0.0289361702128
Runs probability 0.0321105419145
Amino acid sequence MDLPPRAAQCPSEPHVAGASGTGHTQAQPLCCLLLRAPQTRGEGGGQPLASLPVLQFNDI
FGVFLFSLPRAVPLC
Secondary structure LLLLLLLLLLLLLLLELLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEELLE
EEEEEEELLLLLLLL
PRMN -
PiMo -