NONHSAT145547
Revision as of 03:18, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT145547 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3927 nt |
Genomic location |
chr17+:8367554..8371480 |
Exon number |
1 |
Exons |
8367554..8371480 |
Genome context |
|
Sequence |
000001 TATAGCTCTG GAACCTTTTT TTTACATATA TGATTCCCAG ATCTGTATCT TCAAGCCTGC CCCATCACTC TTCCTTCAGT 000080
000081 CCTGTCTTGT GCACTGGGAC ATTGCCCTGT GGCTCTTTGC TGCTCCCTGA AACTGAATCT GTTGAATATA GAGTCTCTTC 000160 000161 TCTTGCAAAT CTTTTCCCCA TGCACAGCTT TGCAGGCCTC TGAAGGACTT CACTAGACCT GTCATCCCAT CTAGAAGGCC 000240 000241 AGCTTTCTTC TCTCTCTGTT CTTTAACTTT CTACTTTTTG AGTCAGGAGA GAGGCGCTAG GTGAGACCCT GGTGGATTGA 000320 000321 TGTTCCCTCT CTACTCCACC CACCTTCACA TTAAGCGTTC CATTTCTGCC CATGTAGAAA TTTACCGGTT CTCTCTTTAT 000400 000401 AGTCTGGGCT GCACCACTTA CTTTTCCCAT TAGAGCCGGC CTGCATTGGA GTGCCGAAGT GGTTGCTTCT GAGGGCTGCT 000480 000481 AGGTGGCCTC TGACCAGGAG GAGACTAGAA AAGGGTCCTG GCCTGGGCAT CTGGAGGCAG CTGTGGCCCC GACTTCCCCA 000560 000561 TCAGTGGCTC ACTAGGTGAG CCTAGGCTAA TGGCTGGACC TTCTCTTGCT TTGGTTGTCT TGGCAGTGGA ACAGTGGGAT 000640 000641 GAACCTGTTG TTCCTTACGG TGCACTTGAA AATGCCAGAA TCCCATCCTC AACCTGCTTG AGGAGCCATC TCCTAGTTGC 000720 000721 TGCTTTTGTA CACCCCCGTG GCCCAGGTGC CAGATTCTTC TTGGCATCCA ATGGTGCTCC CTTTCTGCTG GGTTCCGGGC 000800 000801 ACTGTCTGCA GTACAGGTTT AGGGGCTTGC CTGCCACTGT GATGTGTGAG GCCAGGAATC TGAGGTTCAC ACGTGCTGAG 000880 000881 AGCTGCAGGC ATTTGTGGGG CCTGCCTGGT TGTCCCTGAG GTTTCTAGGA GAAGCAGGTG TCAGGGACTC TGGGACTAGC 000960 000961 CAGACAGATG GAGCCTATTA TATGAGGGCT ACCGTGGCAA ATAGGATATG GCCTTGGCCC CAGAAGAGGC ACAGGCCTGT 001040 001041 GACCTTGGGA GAGTGGGAAG GATGATTTCA AACTTGCAAA TGTGTTGAAG CTCAAAAATC AGACCTAACC CAGTGAGGAA 001120 001121 AGAGACAATC TGGCTGTTTG TCGTCGAAGT AGGACAGTGT GCAACAGGGA GAAATGACAT TTGTCAGAGC CTTTCTCCTG 001200 001201 GGGCTCTTGG TCTCTGTATG CGTGGTTGGA ATTTAAACTC CACATATGTA CTCTGAGTTT AGTTTCTTTA GACATGAACT 001280 001281 TTGTTTCTTC CAAGTAGGCA GGGACTATTT GTCAAGTCTC TGCATGCCTG TTTGTCTGTG AGGTTATCCT CACCCCGTCA 001360 001361 GTGTACGAAA CAGCTGTCTC TGCAGGGAGT GTGTGTCGGC ATTTTTTTTT TTTAAGGAGA ACCTCTCTCC ATGAGTCTGT 001440 001441 ATTTAGCTCC CTGGAGCCGT CTGATGAGTA GGTGGGGGCA GTAGTGGGCA GGTGTGGTGC AGTGTGGCCC CTTGTCGTAG 001520 001521 TTGGCTTTAT CTCCCAAATT GCTAGTGGGA CAAATTTTCC TAGGAAGCGT TTCAAGGTGG AAAGGCTGAA GTGGCTCCTG 001600 001601 AGAGAGGTTC CAGGCTGCAC ACTCCCTCCC CCTCTTGCTG CTTCCTGTGG CTGCGCTGCA TGGTGCGTGA GGGGGATGCT 001680 001681 TGGGGGGCTC CCTGCATCGC TGGGCTCTGG GTGCGTGATG GGGACGCTGG GGGGCTCCCT GTGTCGCTGG GCTCCGGGTG 001760 001761 CTGGGTCCTG GCTGCAGGCT ATTGGGTTGG GCTGGGCTGT CTGCACACGA GTCTGCGTTG AAAAGCCTAC TCATCTGGCG 001840 001841 TTGCTTGCTA AACAATTTTT AAAAGGTTAT TTTTCTCCAC CTTATTAAGA TATTCGTGTA TTAATACATT ATATTTGGAA 001920 001921 AATGTAAGGA GATTTGGAAA ATGATTAAAA AAGGATAAAG TAGTAAACAA AATTCACCCA CAGCCCAGAG GGAAGAAAAG 002000 002001 TAACGATTCT TAAATTTTCT TTTTATGATA TATATGATCC tatgtacata tatgttggtg tgtgtatata tatatgtgta 002080 002081 tgcgtatata taatgtatgt atatatacat ttatTTATAC ACACTCCCCC TCTGTCCCTG CTTTGTGGAT TTAGCTGCAT 002160 002161 GGATAGTAAT GTCTATCTAA GGGGCTATAG TCTAGAATCT AGAATATATA CTATTTGCTT TTTTTTCTTT CATatcattg 002240 002241 aatctacaga gtttggtaac ctgcatcttt ttccacttag tgttagttac attctgaata ttttcccatg ctattaaaaa 002320 002321 acttgtggaa tgtgttttta atggctgtgc aatatcttat tgttcagttg taccattatt tatttaacta gttccctatt 002400 002401 gccaggcatt tagACCTGCT TTATGGGGAA AGAATCAGGA CTGTGGCTTC CGTGGCCAGT GTGCGGCAGT TGCCAAACAG 002480 002481 GTCATGTGGT CCTGGTTCCC CAGGATTCCC AAAGGCTCAA TTCTCTAACC AGCTGGTGCT TTCCAGGCAG CCAGTGCCCC 002560 002561 TTGGGCCATC AGGACCCTAC AGCCTGCGAG GAATAGTTTT AGAAAGCAGA TTAATTTCCT ATTGTGTGTG AGTGATTTTA 002640 002641 AATGAGTTTT TCGTTTCCCC TTTCTTCCCT TCTGTGCTCT GGTTGCTCCC ACAGGGCAGT AAACGGCTTT GACCCCGCTC 002720 002721 CTCCTCCTCC TGGTCTGGGC TCCTCGCGTC CATCGTCAGC GCCGGGTATG CTGCCTCTCA GTGTGTGAGT GCCTAGCCTC 002800 002801 CAGGTGGGGG CTCCTGCCCT CCTCCAACAA CCCAGGACAC CCACGCCTCA CCCCTCGGTG CCTGGGCCCA GCCCCGTGCC 002880 002881 CCTCCGTCTG CCTCCGCACG GCTGGCAGAG GGCAGGCTGC ATGCAGTGGC GGCTACTGGG CCCTGCCCAG CCCCGGAACT 002960 002961 CTGCGCGATA TCAATACTGG CTATTTTCTC TTCTCGCCGT AGTGCCGTTG GTTTCACATG ATTGCACTTT TGTGGGTCGC 003040 003041 AAGGTGATAC ATACGTGTAT TACTTGGTCA CTGGATGCAG AAGTACCCAT TCATCACACC TGCCCCATAG CCCCCACTCT 003120 003121 GCTGTACTGA TAGGATTTAG TTGTGTTTTA GGACATTGCA AATCTTCTAG AAGTTCTCCC CCAAATCAGG TCAATGTGTG 003200 003201 CCCTCCTGAG CTCCCACCCA GGCATCTCCA GTGCTCATGA TCATGTGTCC CCCAACTCCA CCCCTCACAG TTTGGGCCTG 003280 003281 TTTCTGGCAA AGAGTCAGGA AGGTTACTGA ATTAGGGAAC ATTTTCTGCA CCTTCTGATT TTACTTAAGC AGCTACCATT 003360 003361 CCATGGACTT GCCTCCCAGA GCAGCACAAT GCCCGTCTGA GCCCCACGTG GCAGGAGCCT CTGGGACGGG GCACACACAG 003440 003441 GCCCAGCCTC TGTGCTGTCT CCTCCTCCGT GCGCCTCAGA CTCGGGGTGA GGGAGGCGGG CAGCCTCTCG CCAGCCTTCC 003520 003521 CGTCCTTCAG TTCAACGACA TCTTTGGAGT GTTTTTGTTT TCTCTTCCAA GGGCCGTCCC GTTGTGTTAG GAAGGGTGAG 003600 003601 TGGCTGGTTC CAGGGTGGGC CGGTGCCAGC TCCGGGGTGG ACTGAACAGC GGCGGCTGTC CCTGTGCATC CTTTGATTAC 003680 003681 TCTCATGCTG CATTTACTGT TTACATTTGT TTTATTGTAC ATAGGTTTGT AAACATTATT GCCTGAGATA TTTGTATATA 003760 003761 ACTTGGGCTT TGTAGCTTTT ATTTATTCAG AACGCATACG GCATGTTAAT GACTCTGATG GTGTCCTCCT CTGGGCAGCT 003840 003841 GTATAGGATC ATCATGTGGT TACAAAAAAT ACTTCCCTCA AAAAAATTCT TTTAATGTGG AAACAATAAA TTTCACAGAA 003920 003921 AAAAAGG |
Predicted Small Protein
Name | NONHSAT145547_smProtein_3362:3589 |
Length | 76 |
Molecular weight | 7823.0018 |
Aromaticity | 0.0533333333333 |
Instability index | 47.0266666667 |
Isoelectric point | 6.68572998047 |
Runs | 9 |
Runs residual | 0.0289361702128 |
Runs probability | 0.0321105419145 |
Amino acid sequence | MDLPPRAAQCPSEPHVAGASGTGHTQAQPLCCLLLRAPQTRGEGGGQPLASLPVLQFNDI FGVFLFSLPRAVPLC |
Secondary structure | LLLLLLLLLLLLLLLELLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEELLE EEEEEEELLLLLLLL |
PRMN | - |
PiMo | - |