NONHSAT145718
Revision as of 03:19, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145718 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
485 nt |
Genomic location |
chr17-:13143226..13150802 |
Exon number |
5 |
Exons |
13143226..13143276,13143861..13144029,13145161..13145281,13147875..13147993,13150778..13150802 |
Genome context |
|
Sequence |
000001 TTGTGTGGAC TGTTCTATAA ATGTCAAGAC TGTTTCAAAA TGACCAGAGA ATCTGCTACT GTTTCAAGTT TTTCTGAAAC 000080
000081 CTTAGGATCT TAGACATGAA GCAATTCTCC AAGCTAGCAA TGTGCTAGCT AGCGGGACAC AGGATTTCAA TCAGATGCCA 000160 000161 CTCTAAACAG CTCTCCACAA CGCAGCCAGA ACAATCTTTC AGCAACAGAA ATCAGATGAA TCACCATCAC TTCAAACCCT 000240 000241 TTAGTGACTT TTCTAATTCT TTTGGTTACA CTAGCTTGCT TTCTACCTTA CAAAAATTCA TGATTATTTT GAGGAGCCAT 000320 000321 GAAGATAATG GGAATGATCT CTTTTGTAGA AGAACCCAGA GTTTTGTGAA ATCCCTGAGG GAAATGAGGA ATTTGTTGGG 000400 000401 TGGGACCAAG GTAAACTCAG GCCAGGAACC AACCCAAAGC TATCTAGAGT GACACACAGT GGATCAGTGG TTGCCTGATG 000480 000481 ATAGT |
Predicted Small Protein
Name | NONHSAT145718_smProtein_215:451 |
Length | 79 |
Molecular weight | 9071.1097 |
Aromaticity | 0.115384615385 |
Instability index | 42.9153846154 |
Isoelectric point | 8.97894287109 |
Runs | 11 |
Runs residual | 0.0073483427142 |
Runs probability | 0.0240882593824 |
Amino acid sequence | MNHHHFKPFSDFSNSFGYTSLLSTLQKFMIILRSHEDNGNDLFCRRTQSFVKSLREMRNL LGGTKVNSGQEPTQSYLE |
Secondary structure | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHEEHHHLLLLLEEEELHHHHHHHHHHHHHH HLLLEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |