NONHSAT145765
Revision as of 03:19, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145765 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2005 nt |
Genomic location |
chr17+:14207057..14209062 |
Exon number |
1 |
Exons |
14207057..14209062 |
Genome context |
|
Sequence |
000001 TACCACCACC ACTCCCCCTC CTCCTGGGAT GGTGATTCCA GGGCCAGGCG GCAGGCTATA ACTAGCGCCC TTCCAGGTGG 000080
000081 AACCCGCCAG AGCCCCGAGG CAGCCTAGGA TTTTCTGAGA TCAGACACAC TTGGGCCGGG TTGGGAGGAA CTGGCAGGAA 000160 000161 AAGGACTGAA CCCTTAATGT CAGGCGGTTT TGAAGCACCT GGGGCAAGCT ATGGAAATCC CCACAGGAAG GCTCACGCAG 000240 000241 TCTCTTAGGC GGCTGCCCTC CACCTGCCAC GTTCTTTTTG ATTGACTAAA AAACGCTGAA TGAAGAACGA AGTCGCGTGG 000320 000321 AAACCCTCGC CGCGCGCCTG CAGCGGACAG CGCAGCCCGG GAGGTTCGGC TGCCGACTTG CGCCCGGGGG CTGCGCTGCG 000400 000401 AGCGGCCACG CATGGCGGCT GGACCCGGGC GGCCGCAAGG GCTTGGCTGG GCCGCGGGAG GCGGGAGGTT CTTCGTCCTC 000480 000481 CCGAGCCATC TCCCTGAACT GACAAGCAGG ACTCCCGGGT CCAGGGGGCA CAGGGCCCGG GGCGGTGACC CGGCGGATCG 000560 000561 GGCTGCCGGA GGAGCCCACT GTAAATGCCG CAACTGGCCC CAAACACTGC GTTCCTGGAC TGCACCAGCA GCTCCTGGCG 000640 000641 CGGCCGCAGA GTTGGTGGAT ATTTTCCAAG GGGGAAAAAA ATCTTTTAAA TGCCATCTGT TTACTTTAAA AATGTTGATT 000720 000721 ACTTAAGAAA AACGAATGGA TGTCTGGGCA AAGGTATGGA CGTCACAATT ATTTTGAAGG CGTCCTTTTT AACTTTAAAC 000800 000801 AGACCACGCC AGGAGGAGAC TGCTGACCCA GAGCGCATTA CCTAAAATCT GGTACCCAGA GTGCACCCTT CGCCCTCGTT 000880 000881 GGAGTTCTCT CCTCTCTGCC AAGCTTTGCT CCGTGCCAGA GGTGTGCTCC ATTGTACCTC CGCTCTGTCC CTGCAGTCAG 000960 000961 GCAACCAATT GGAGAAGAGT ATAAATAGTA ATTAACCAGG GAGAGTTGTA ATTCAGAAAC CTAGTTAAAA CAAGTCCTCA 001040 001041 AAAACTAGAG AATATGAGAG TGGGGAGACA TTTTGAAGGC ATTAAGAACA AAAAACGATG GGGACGAATG GTTGAGTCTG 001120 001121 AGGATCAGCA TCGTAATCTG TTAGAGAACG AGGTCGTGGC TGTGTCTGTG AGTCGTTAAT GGGTTTAATC GGTTGATACA 001200 001201 CAGCCTGCTA GTGGCCTAAC CAGTAACCCA GGGCCTGGCA GATTTGCATG ACATCTCGGA GTTTGATTGC TCTTCCTTCC 001280 001281 ACTTGGCAAA AGGAGACACC ATCAGCCGGA TCAGGAGGGG TCATGGTGAG ATGGAACCCA CCGAGGTGGT GTACAGAGCT 001360 001361 GGCGCTGCCA ATGGCCAGAG TGGCAGCCTT TCTACCTCCT TAACCCTGCA AAAATCAAAC GTGCTAGTAC GCACTGTCCA 001440 001441 TCCACACTGG AACTCCAGTT GGTTTTAGTC TGCGATGATG ACTCTTCTGG GTTGACTTTT CCAGTTCATT ATGCAGCCCT 001520 001521 CTTGAAGCAG GCCTCCCAAA CTTAGCAGAC ACCAATGAGA ACCTCACAAA GAGGCTCATC AAGCAGGCTG GTGAAACTGG 001600 001601 GTGTTACTTC CTGTTCCATG GGTACCCCAT AGTGTTTGGG AAACACCGGG CTGTGGTTCA GGAGAATTTC ACATATGCTA 001680 001681 AGATGGAGAA AGAACCTGCC CTTTACATTT AGGCTTGGGA TGTTAATTTA AAGTTTGAAT GACCAAAAAT TAAATCTGTA 001760 001761 ACTTTTAAAG TTTCTCTTTG TGATTTTACT TAAGTGTTGG TAGATATTCT TAAATTGTAA TGACCTCAGT TTGGGAATTA 001840 001841 AGTTAGCCAA ATATTGTGTA ATTATTGTTT GTTATACAAA AATATGCCTT AGACTGTACA GCGGCAGAAA CTCCCTCTAC 001920 001921 CACCTCGGTC CCCCTTTCCA TTCTGCGTTA TACAAAATAA GCTGACACGT TAATGCTGTG GCCCACATTA AACAAAGTAT 002000 002001 ACCGT |
Predicted Small Protein
Name | NONHSAT145765_smProtein_299:496 |
Length | 66 |
Molecular weight | 6885.7395 |
Aromaticity | 0.0461538461538 |
Instability index | 79.2476923077 |
Isoelectric point | 11.8294067383 |
Runs | 9 |
Runs residual | 0.0118269230769 |
Runs probability | 0.0420518557773 |
Amino acid sequence | MKNEVAWKPSPRACSGQRSPGGSAADLRPGAALRAATHGGWTRAAARAWLGRGRREVLRP PEPSP |
Secondary structure | LLLEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLHHHHHHHHHHHLLLEEEELL LLLLL |
PRMN | - |
PiMo | - |