NONHSAT146458
Revision as of 03:21, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT146458 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1205 nt |
Genomic location |
chr17-:19199909..19209574 |
Exon number |
3 |
Exons |
19199909..19200651,19207128..19207251,19209252..19209574 |
Genome context |
|
Sequence |
000001 AGACGTCGTT GTGAGACAGG CCTGAATGGG CCCTTCTGAC CACCTGAGCC TGGCCTTGGC TCTGCTCTGA GGATCTGAAG 000080
000081 GTTCAGAGCT CACAGGGACC AAGGGAAAAA GCAAGTGCTG GGGGATGTGC CACTCTCTCA TTGTTGCAGG TTGCTTTCCC 000160 000161 AGACACTCAC TGGAAGGAAG AACGGGAATT GTTAGTTTAA GCTCATCACT AAAGTCGCAT CAAATGCACG GACCTTCTCC 000240 000241 AGGAAGGCGG CCTTTTGCAT TATGAACCCC ACTGGAAGAG CTCCAAGTCT TCACTTGCTG TGGTCAAGAA CTGTAACCAC 000320 000321 AGGAGAGACG GGATTTCACT ATGTTGGCCA GGCTGGTCTT GAACTCCTGA CCTCGTGATC TGCCTGCCTC GGCCTCCCAA 000400 000401 ACTGCTGGGA TTACAGGCGT GAGCCACCCC ACCCGGACTA CACCAGACCT ATGATTCAGA TCTGTCAGCA CTTTTGGGGA 000480 000481 TGTGGGTCTT GCCCTGGCCT TCAGTTCCTC TCCAGATTAA GAACCTGCAT GCTTTGCCCA CAGACAGATG GCTACAACAA 000560 000561 AACTGCACAA CTTGGTAGAT CCAGACTGCC AGTGGTCATT CTATGCAGCC AGGGCCCTGT CACTAAAATC TGTAGGCTGT 000640 000641 TCAGTGTGAA GATGAGGAGT GACTGACAGT CCAACGTCAG GGCAAGGATG ACTTAGGGAT CTTCACCCAG AGGAATACTA 000720 000721 TGTACAACTG TTAAAATGTT TACAGGGTGT GTAGGAACCA CAGAAAATGC TTCTGTTTCA ATGTCACAAG ACAAAAAGCA 000800 000801 GGAATGCAAA GTTGCGTTCA CAGTGTGAAA AAGAAAATGC TTGGGAAAAA GTCCAGAAGG AACTACACCA ACACGTGGCC 000880 000881 GGGCATGATG GCTCAGTCCC GTAACCCCAG CACTTTGCGA GGCCACAGCA GGAGGATTGC TTGAGGCCAG GAGTTCCAGA 000960 000961 TCAGCCTGGC CAACATGGGA AGACCTCGTC TCTACTAAAA ATTAAAAATT CGGCTGCGTG TGGTGGTGTG CGCCTGTACT 001040 001041 TCCAGCTACT AGGCAAGGCT GAGGTGGAAG GATCGTTTGA ACCTAGGAGT TCGAGGCTGC ATGGGCCATG ATTGTGCCAC 001120 001121 AATGCTCCAG CCTGGGCAAC AGCAAGACAC TGTCTCAAAA CAAATAAATA AAAATAAAAA TAAATACACA AAAAAAAAAA 001200 001201 AAAAA |
Predicted Small Protein
Name | NONHSAT146458_smProtein_803:943 |
Length | 47 |
Molecular weight | 5317.1962 |
Aromaticity | 0.0434782608696 |
Instability index | 77.8739130435 |
Isoelectric point | 12.016784668 |
Runs | 6 |
Runs residual | 0.0309265010352 |
Runs probability | 0.0120414532179 |
Amino acid sequence | MQSCVHSVKKKMLGKKSRRNYTNTWPGMMAQSRNPSTLRGHSRRIA |
Secondary structure | LLEEEEHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELL |
PRMN | - |
PiMo | - |