NONHSAT146579
Revision as of 03:22, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT146579 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2333 nt |
Genomic location |
chr17-:20422625..20432000 |
Exon number |
8 |
Exons |
20422625..20422926,20423085..20423233,20424173..20424409,20424658..20424772,20424909..20425541,20426713..20427396,20430074..20430152,20431867..20432000 |
Genome context |
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Sequence |
000001 TTAAATGTCT TGAGATTAAA AAAGATGTTT TGTAGTTATA CTCAAGCTTG GAACCATAGT GACCAACTGT TACGGACAGA 000080
000081 CTGGATTGTA TCCCCTTCCA ATTAAGTTAC GGTGCTGCTA CAGAAAGAAA AGAGGTTGAG ACTGAGCTAC AGTTAATCTG 000160 000161 TGGCAAGGTG CTGGATGCAC TGGACAAACA CCTCATTCCA GTAGCTGACA CTGAAGTTGA ACTAATTGAC ACCTACCACC 000240 000241 GCTTGCTGGA GGTTGAGGAC GCCCAGTGAG TGTGCACCCG GGCTGGAGAA GGCAGGAGGT ATGGCCCGGA AAAGAGACAC 000320 000321 AGAAAGGTAA TCCAAGAGGG CTTTCTGGAG GAGGTGGCAG CTGAGCCTAG AGGTGAATTT CGTTGGGGAA GAGGGAGTGA 000400 000401 GGCCTAGGCA GCTTAGGCCA TGACCCCCAT GGTGGGAGAT GGCTGCATAA GGGTCTCTCT CCTGGCATCC GTCTTTACCC 000480 000481 ATGCCTGGGC ATCCTACCCC CATCACCCTT TAACCCCCGA GGGCCTTGGC TGGGTCCCAG AAATTCCCAG GAGGGTCAGA 000560 000561 GAAGACCACG GGGACTCTCA TCACCCCCAC CCTGGCTCAC TTCCAAAAAG GCTGCAAGAA GGATGTTGGA GGGTCTCCTG 000640 000641 GAGGCTGCCA AGGGCATTTT CTCATGGAGC CCACATCTCT CCCCGATCGT GGTGGCTGTG ATCGGTAATT CCAGCTTCAT 000720 000721 ACTGGCTACA GGTGGATGAT GCCCACCTGG CTGCCGATGA CTTCTGCACC AAGTGAGGCT GGGTCTCTGG AGCTGCCCCA 000800 000801 GGGGCTGGAC AAGCTGACCC TGCCTGGAGC CAACCTGGAG ATGCAGCCTG AGAACCTCAA GGAGGACCTG GTCTACCTGA 000880 000881 AGAAGAACCA TGAGGAGGAA ATGAACGCCC TTTGAGGTCA GGTGGACAAG GATGTCAGTG TGAAGATGGA CACTGTGCCT 000960 000961 GGAGTGAACC TGAGCTGCAT CCTGAATGAG ATGCGTGACC AGGACAAGAA ACTGGTGGAG AAGAGCTGCA AGGATGCCCA 001040 001041 GGGCTGGTTC TTCAGCTTGG TGGGTGGCCG TGTGTAAGCA GGTGTGCACA CGTGTGGGCA CATACGCCGT GTGCTGGTGC 001120 001121 AGTTGGAACA CCGGCAGATT CACAGGCTGT CCCAGTTGGA AGGACTTTTG GAAACCAGTC GGACCAGCCC TTCATGTCTT 001200 001201 CAATGTAAAA TGTGAGGCTC AGAGAGGACT CAAGCTCACA CAGCCCTTCA CTGTGGCCTG CAAAATAGAT CCAGTTCTCT 001280 001281 GCAAGTCTGG TCTTGGGTTT CCACCACAGC TGTTTACAGG ATGTGTGTAT TTGAGTACAT ACACATACCC TTGGCAAGCA 001360 001361 CAGGCTGAGT GTGTCCGCTG TCCTAGGGAC AGCAACAGGT GCAAAAGAAT AACACCCAGT GCCTGTCTTT GAGGTGCTGT 001440 001441 AGTTCGGTAG GAGTAAGAAA TGCAAACGAC CGCAGAGCAG GCTGAATTCC TCCAAGGTCC AATGTGGGTG CAGAGAGTCT 001520 001521 TTGTGTGCAG AGAGAGGGGC TGAACTGCGA GCTGGCCACC AACACAGAGG CCCTGCAGAG CGGCAGGATG GAGATATGGA 001600 001601 GCTCTACATC TCTGTGCAGA ACCTGAGCCG TCCCAGCTCA GCAAGAAAGC ATTGCTGGAG GGCAGCCTGG TGGAGACGGA 001680 001681 GGTGTGTTAC AGGACCCAGC TGGCCCAGCT GCAGGGGCTC ATCAGAAGCA TGGAACAGCA GCTGTGCGAG CTCTGCTGTG 001760 001761 ATGCAGAGCA CCAGGACCAC GAGCACCAGG TCCTTCTGGA CGTGAAGACG CAGCTGGAGC AGGAGATCGC CACCTACAGC 001840 001841 CGCTTGCTAG AGGTTGAGGA CGCCCAGTGA GTGTGCACCC AGGGGAACCT CCTCTGACAG GGCCTGCTTC TCCCCAGCAG 001920 001921 TGCTTGCAGG GGCCTGGGCT GGCTGGCATC CCTGGGTCGA TGGGTGCTCC TCTCCCTGCA GGCTGGCCAC TCAGTACTCC 002000 002001 TTGTCCCTGG CCTCGCAGCC CACCCGGGAA GCCACAGTGA CCAGCCACCA GGTGTGCCAT CGTGGAGGAA GTCCAGGTTG 002080 002081 GAGAGGTGGT CTTCTGTAAG CAGGTCCATC TCTCCACCCA CTGAGGCCCC TTTCTGCCTG TGACAGCCCC ACCTCGAGGG 002160 002161 TCACGGCACA GCCATCAGCT CCAGCTCCCA GCATGCTACT GCCACGCCCC GAGTGTCCGT CTGGGCACTG GTCCATGACC 002240 002241 TGTTGTCTTT CTGTATCTAC TTTCTGCAGC CCCTCACTGA GGAGGCCTCC TGGGTTTGTC CAGTGCCTGC TATTAAAGCT 002320 002321 TTGCTCCAAG TTC |
Predicted Small Protein
Name | NONHSAT146579_smProtein_419:700 |
Length | 94 |
Molecular weight | 10626.0121 |
Aromaticity | 0.0967741935484 |
Instability index | 49.7086021505 |
Isoelectric point | 9.48724365234 |
Runs | 12 |
Runs residual | 0.00189167662286 |
Runs probability | 0.0309868692222 |
Amino acid sequence | MTPMVGDGCIRVSLLASVFTHAWASYPHHPLTPEGLGWVPEIPRRVREDHGDSHHPHPGS LPKRLQEGCWRVSWRLPRAFSHGAHISPRSWWL |
Secondary structure | LLLLLLLLEEEEEEHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLL LHHHHHHLLEEEEEELLLLLLLLLLLLLLLEEL |
PRMN | - |
PiMo | - |