NONHSAT117936
Revision as of 06:21, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT117936 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
572 nt |
Genomic location |
chr6_qbl_hap6+:1322108..1325666 |
Exon number |
4 |
Exons |
1322108..1322177,1322294..1322448,1323003..1323112,1325430..1325666 |
Genome context |
|
Sequence |
000001 GTGCTTTAGT ACCCGACGCT GTCTGGGAAT TCCGGGCGTT TCGGCTCCTT GGTCGCAGAG GCAGGAGGGC ACCCGACCGC 000080
000081 ATGTCTGTCA TGGACCTCGC CAATACTTGC TCCAGCTTTC AGTCGGACCT GGATTTCTGT TCAGATTGCG GCTCGGTCCT 000160 000161 GCCTCTGCCC GGGGCTCAGG ATACGGTCAC CTGTATTCGC TGTGGCTTCA ACATCAACGT TCGGGGTTGA CAGGCGCTGC 000240 000241 CCTCGATGTG GTCATGAAGG AATGGCATAC CACACCAGAC AAATGCGTTC AGCCGATGAA GGGCAAACTG TCTTCTACAC 000320 000321 CTGTACCAAC TGCAAGTTCC AGGAGAAGGA AGACTCTTGA CCTTTTTCCT GGGCAACTCT GCAGTCCCTC CCTCCTTTCG 000400 000401 GAAGGTGAAG GATACTGGGT TTTTAGATGC CTTGTCCATC CTGTCTGGTT GCAATGTTTT GCTCCCAGAA GAGAATCAGA 000480 000481 TCATCATGTG GGGATTACCA TTGTTCCTGG AGTACTCCTA CCCTTAGTTG AATTTCCTTA TTAAAGTTAT ATTTTTCTAT 000560 000561 AAGACCCTGA CA |
Predicted Small Protein
Name | NONHSAT117936_smProtein_80:229 |
Length | 50 |
Molecular weight | 5189.8543 |
Aromaticity | 0.0612244897959 |
Instability index | 40.8836734694 |
Isoelectric point | 3.97125244141 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.0475769887535 |
Amino acid sequence | MSVMDLANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRG |
Secondary structure | LLHHHHHLLLLLLLLLHHHLLLLLLLLLLLLLLLEEEEEELEEEEEELL |
PRMN | - |
PiMo | - |