NONHSAT119123
Revision as of 06:27, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119123 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2270 nt |
Genomic location |
chr7+:7680342..7918851 |
Exon number |
4 |
Exons |
7680342..7680452,7712940..7713084,7841301..7841374,7916912..7918851 |
Genome context |
|
Sequence |
000001 ACCTGAGACT ACCTTTCTGC GATCACAGGA TTCCCGGCGG TGACTTGACC CCGGAAGTGG GGTGTGAAGC TCCGGTGCTG 000080
000081 GTGCGGCGGG GGACTGCGGG GCCAGCCTCA GGTAGCAGCA GCAGCAGCAG CAGCAGCAGC AGCAGCAGCA GCAGCAGCAG 000160 000161 CAGCAGCAGC AGCAATGTTT CACTTCTTCA GAAAGCCTCC GGAATCTAAA AAGCCCTCAG TACCAGAGAC AGAAGCAGAT 000240 000241 GGATTCGTCC TTTTAGGAGA TACAACAGAT GAGCAAAGAA TGACAGCAAG AGGCAAAACT TCGGACATAG AGGCCAACCA 000320 000321 ACCTTTGGAG ACCAACAAAG AAAATTCATC CAGTGTGACT GTATCAGACC CTGAGATGGA AAATAAGGCA GGCCAGACTC 000400 000401 TGGAGAACAG CTCATTAATG GCCGAGCTCC TGAGCGATGT GCCGTTCACC CTGGCCCCGC ATGTGCTGGC AGTACAGGGC 000480 000481 ACCATCACTG ACCTTCCCGA CCACTTACTC TCCTATGATG GCAGCGAAAA CTTATCACGG TTTTGGTATG ATTTCACTCT 000560 000561 TGAAAATTCA GTGCTCTGTG ATTCATAACC TTTATGTCTG TTTGCACCTT AACAGCTTTA AAATATGTTC GCCTATTTTA 000640 000641 TCTAACCTGT TTGATGTTCT TTGCCGTTTC ACTGTTTAAG GTCCTCAGCA AGGATCATAA AGCAAAGAAA ATAGCATTAT 000720 000721 GTTCACTACT CTATTTTTAA GAAAAAGGTA CATTTGTATA CAAATTGAAC TTAAGTTCTA CTTCCTTTCT CCCATATAAT 000800 000801 AAATATACAA ATTAGGCTAT GAAGGTTTTA GGAAAGGACT CGATTCCTTC AGATGGTCTC TCAAAATATA ACACCTCAAA 000880 000881 TTTATCTTAG AAGAACTGTG AAAAAGAATT GTGGCATTTT TCAGTCACTA CAGCTCCGAA GTCTGAGCAA GAAGTGGGTG 000960 000961 TGAAGTCTCC TCTCTGGTTT GTAGGAAGTT GAATTGGTGT TATTCCTGCA TTTTTTTCTT CCACAGTGTT TATGAATGAA 001040 001041 TTCAGAAAAA AAGTTGCCAG TTAGCTTAAT TTCTTCAGAT GCATTGATGT GGAAATTTAA AACTTGTCCT AAACAGCAGT 001120 001121 GCTAGTTTGC TGATACAAGG ATGCTAGACC TGCTCTGCGT GCTCTTTCTG GAGTGGCCCA TTTCGGTTTT CTGAAACCCA 001200 001201 TGGCAGCCCT TTCCATCGTG AATAATCGTT GTGTTCCCAC CTTTGTTCTC TGCCTTTTTG CTACTTCAGT GTGCTCTCTG 001280 001281 ACCAGCTTTC CAAAGAACTT TCCCTGCTTC TGCCTCGGTT GCCATTTGCT CTCCTTACCA CATATGTTCC CAGTTTATGA 001360 001361 AGAGATCCAC ATTTCCTTTC AACCCCTCTG CCTCCTGAAG AAAAACATCT CATGATGATA CATATTATTG CTGATAACAC 001440 001441 CCTTATTTAG AAATTTGTTG GCCACAATAG AGATGGAAAT GTTTTACTGC TGGAAAAACT GAAATCAACT CATTTCCAAT 001520 001521 TAGAGTATAG GCAGAACACC TAGATATGAC TTTTAGTTCT TGAATATCCA TTACTTACTT TAATGAAAAC AGAACTGCCA 001600 001601 TTGGTCAATA AACTGTAAAG GGAAGAGGTA AATTGTGATA GAGAATTTTC TATGTCATGG GAAATTGAAA TCACATTTAT 001680 001681 TTTGATTACC AGCAATATGA TTTGTTAACT CTGTGCCAAG TTTTAAGTAT ATTTTTTCAC AAAGATAGAG TGCCATAGTG 001760 001761 AAACTAAACA CTGTGCATAA AGGTACATGA ATTATTCCAG TTTTAAAGTA TTATGCATGT TTGTTTAATA AATGTGGCAT 001840 001841 GGTTTTAATA CAAATGCTAT GTTATTTAAA AGTTAGAGGA ACATTTCTAT TGACAAAAAT ATGCTTCATT TACATATAAT 001920 001921 GTTACCATAT GGTGTTAATG ATTAAATTAG ATCTTTACAT AGTTCTTACA AAGCATCAGT CTAGGAAATA TGACTTATTA 002000 002001 CTGATGCAAA CGTGAACATT TTGTAGTAGT TTTGTAAAAG AACATCCTTT TCAAATATCT GTGTTAATGT ACCCTTGAAA 002080 002081 TTAAATGCAA GCACATAGTC AGTTTGTCTA ATTTTGTGTG AAATTTTGTC GAAAATACCT AAACATTTCA TCTATATTTG 002160 002161 TGCCTACCAT GTTATAAATG TTCATAAGTA CCTTCATGTG TCTATAAAAA ATGTTATATT TAAATAAATG TGAATTAAAA 002240 002241 TAAAATTTTT GATTATTTTC AGATCCAGAA |
Predicted Small Protein
Name | NONHSAT119123_smProtein_1199:1414 |
Length | 72 |
Molecular weight | 7949.5335 |
Aromaticity | 0.112676056338 |
Instability index | 57.7169014085 |
Isoelectric point | 8.22552490234 |
Runs | 13 |
Runs residual | 0.0345441067457 |
Runs probability | 0.0216460804696 |
Amino acid sequence | MAALSIVNNRCVPTFVLCLFATSVCSLTSFPKNFPCFCLGCHLLSLPHMFPVYEEIHISF QPLCLLKKNIS |
Secondary structure | LLLEEELLLLLLLLEEEEEELLLEEELLLLLLLLLLEELLLLLLLLLLLLLLLLLEEEEL LHHHHHHLLLL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL LLLLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTiiiiiTTTTTTTTTTTTTTTTTToooooooo ooooooooooo |