NONHSAT120980
Revision as of 06:35, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120980 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
673 nt |
Genomic location |
chr7-:63567200..63567950 |
Exon number |
2 |
Exons |
63567200..63567755,63567834..63567950 |
Genome context |
|
Sequence |
000001 GTGAACGAAA ATCTGTTCAC CTCATTTACT GCCCCGACAA TCCTAGGTTT ACCCGCAGCA GCACTAATCA TCTTGTTTCC 000080
000081 CGCCACACTC CTTCCAACCT CCaactattt aattaatACA AGATTGATTT CTATTCAACA ATGACTAGTT CAACTTGTTC 000160 000161 TAAAACAAAT AATAATCACA CATAATATTA AAGGACGAAC CTGATCCCTT ATACTAATAT CCCTAATTCT CTTTATTGCC 000240 000241 TTAACCAATC TCCTTGGGCT TCTACCCCAC TCATTTACAC CAACTACTCA ACTATCAATA AATCTCGGTA TAGCAATCCG 000320 000321 CTTATGAGCA GGAACAGTAA TCACAGGTTC CACTTTAAAA CTAAAAACTC CTTAGCTCTC TTCCTGCAAG GCACGCCCAT 000400 000401 ACCACTTACC CCTATACTAG TAATCAACGA AACCATTAGT CTACTTATTC AACCAATGGC ACTAGTTGTA CATTTAACAG 000480 000481 CCAATATTAC GGCCAGTCAC TTACTCATAC ACTTATTGGA GGAGCCACAC TAGTATTATC AACTATTAAC CTTCCCACAG 000560 000561 CTTCAATTAC CCTTATTATT CTAATTCTAT TGACCACTCT CGAATTCGCT GTGGCCCTTA TCCAAGCTTA TGTCTTTACG 000640 000641 CTATTAGTAA GCCTTTATTT ATATGACAAC ACA |
Predicted Small Protein
Name | NONHSAT120980_smProtein_323:532 |
Length | 70 |
Molecular weight | 7757.0877 |
Aromaticity | 0.0434782608696 |
Instability index | 42.1492753623 |
Isoelectric point | 8.44781494141 |
Runs | 8 |
Runs residual | 0.0233892954513 |
Runs probability | 0.0688372195724 |
Amino acid sequence | MSRNSNHRFHFKTKNSLALFLQGTPIPLTPILVINETISLLIQPMALVVHLTANITASHL LIHLLEEPH |
Secondary structure | LLLLLLLEEEELLLHHHHHHHLLLLLLLLLEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooooo ooooooooo |