NONHSAT121376

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT121376

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2650 nt

Genomic location

chr7-:72416689..72419484

Exon number

3

Exons

72416689..72419136,72419203..72419350,72419431..72419484

Genome context

Sequence
000001 GGAGAATGAA GACATGGTAC AAGATGCGCT GCAGCAGAAC CCGGGCGCCT TCAGCAGGCT AGCTCCCGCC CTGCCTGCCC 000080
000081 GGCCCCACCG AGGCCTGAGC ACGTTCCCGG GTGCCGAGCA CTGCCTCCGG GCTTCCCCCA AGACCACGCT TAGCGGTGGC 000160
000161 TTCTTCGTTG CTGTAATTGA ACGGGTCGAG ATGCCGACGT GACTCAGCCT CACAGGCCAA AGCATCAGCA CCAGAACGCA 000240
000241 CACCCAGCCC AGCCCCAAAG AGAAAGAAGA GAGCAAAAAG CTGCAGCCGG TGCTTGCACA CCGCCTTGCA CATAGCAGAG 000320
000321 GCTCCGGGCT CACTCCTTCC TGGTGGGAAA GGAAGATGCC TGTCCTCTCC GTGGAAGACC CTGGGCCCTC ACCGCAGGCA 000400
000401 GCAGTTTGCG TTTTGAAAGG TTATTGGGTC CCTTCCTCGG GCTGTGTTCT TGCTGGTGAG CAAAAGTGTT GCCTGCAGAA 000480
000481 ATAAAATGCA GAACGTACTC TACGATAGAT CACAGTTTTT TATTCTTAAT GTCACAAGCA GGAGAAAAAT CTCACATTCA 000560
000561 TACTAAAAAT TCCAACTAGA CTCAACAGGA ATGAAGTCTC TATTTGTAAT GGAAAGTCCC AGCCTCCCGC TGCCGTCCAG 000640
000641 TGCGTGTACT GTACACATCC ACACTCATTC TCACTCAGGG TTCCCGGACC GGCTGTCCTG CCTGCGGAAC TGAGGTAAAC 000720
000721 TAGCTCAGGT ACTGACACTA GGAGGGTCTA CCTTACATAA GGTACAGGTA GAAGCTTGAT TGCTAGGCCC AGGCCCACCC 000800
000801 AGACCCTCCA ATCCTAACAG GTATTTAGGC TTGAGGTTCA CTCCCTCCTC AGCTGCACAC GCAGCCAGGT ATTAACGAGG 000880
000881 ATCAGAGCTG TTCTGAGGGG TGGGAAGGAG CAGCCCCGCC ACCACTCACT CACCCTCAGT CACATCGGGG AGGGGGCACC 000960
000961 AGTTACATTT ACATCACATT ATTTATAAAA TAAGAATTAC ATTTCATATA ACATGGCCAG AAGGAGCTCT AGTCCCCCAG 001040
001041 GAAAGCTGCC GGGGACAGCA TTTGAGCCTC TTCTTTGCAC AGGCATAACT TAACTATACA GCTAATTCCT AGTTAATAGC 001120
001121 ATTTATACTT AACCACCTCA ATGAACCAAG CTTGAAGGAA TTTAAAAGGC AATTTAGCtt aaatacaaaa ataaattttt 001200
001201 gttaaaaaac gtttaaatat ttttttcttt taatttaGAC ACACGCATTC ATACTTCTCC CAAAGAGGTT GGGCGTGGCA 001280
001281 GCAAGGCGCT TGGGCCTGGG GTATGTGGTT TCAGAAGGAC GGAAGGAAAG GATGGGCTGC AGAGGGCCCT GTTTGGGAAA 001360
001361 AATAGGATTT TAAAAATATG GTTCATTAAT TTAGGTTTTC TAACATCTAC TTTGGGTGAT GTAGCCTCCA GTGAGGTCAG 001440
001441 TTAAGTGGGA CAGAAACGGC AGAGGGAAGA GGTCTTTGCT TCCCCTGGGC CCATTCTCCC TGGCTGCCAG CCCTTGAAGT 001520
001521 CAGAACACCA TGGGAAAATT CAGGAGTCGG CACTTGTAGC CGTCAAGTGG TGCTACTTTC CACATTCAAT TAGCGAGGCC 001600
001601 CCAGAAAACT TGAAACAGGA AGTCCGGCAC TACCAACATG CCGCCACTCA TACAACTCAA CTCTTCCTCC AAACTCGATT 001680
001681 CAAAGAGCAA TACACAGAGC GTCAGACAAA GGAACACAGG ACAAGGCTTG AAACATACAA TCCTGGAGAG GCAGACGAGG 001760
001761 GCCCAATGGG GCCAAAGGGT AGCTGGGCGA GGAGGCAGCT GAAGCAGCGG TGGGCATCCT GCCTGCTCCA AGAGCTTCTC 001840
001841 CCTTCACCCC TGGCTCTGCC AGGCTAACAG TCTTGAGCCA CCAAGCTCTG AGGGGCCAAA CTGGCAGAGG GTTGGAGATG 001920
001921 AAACATTGAT TCAGGCTTGG CAGGAAGAAA ACGGCAGGAG CAGCACCCAC TGGGGTCTCC AAGGCAAAGC TAGATTCAAG 002000
002001 GGCATTTAAA AACGAAGGAA TCCTGCAAGG AACTGGTGAG GGACACAGCA GCAAGAAATG GGGAAACAGA GTCCCCAGAA 002080
002081 GGGACCAGAG GAAGAGAACC ACTTCTCACA GCTAAGCCAA GCAAGATAAA GCTTTACGGA TAGCCCATTT CCCAAATCCC 002160
002161 ATCAGGTGCA CACCACCGAT CCAGGCGGGC TGGACCCTGC CCCCTCCAGC GACGACGGTC TCGGGGAAAG GTGGAAGGGG 002240
002241 CGCCTGCCTA AGGGTGTGCT AAGCGGGAGT CAGGGCAGCG GACACTATGT ACAGGTGTTT CCTTAGTTCT CCAGCCTCCC 002320
002321 CAGTAGAACT GTTCAAGTAG AGGTCCCGGG CTTTGGCCCT CCGCATCCTG CTTCCCCTTC CCTGAGGCTT GTGCTTCCTC 002400
002401 CAGAAGGGAA AGGGCCCCAG GGCTGCCACT GCCCCCTGGC GGCTGAAGCC AGAGATCCGG GGTAGGTTTG CTTTACGCAA 002480
002481 CTGGAAGGGT CCAAGGCTCT TCCTAGCAGG TGCCAAGGTC CAGATTTAGG GAAGGGGTGG GGGGAACAGG GACAGGGGAC 002560
002561 AAAGGCTACT TTTTGCGGGT GTGCTGCCTT CGGGCCTGCA GTCGCTGTCG AGCCCCTGGG GTCTTGGATC CCGCACCAAT 002640
002641 GGAAAATGAA
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Predicted Small Protein

Name NONHSAT121376_smProtein_1637:1801
Length 55
Molecular weight 5960.6211
Aromaticity 0.0185185185185
Instability index 41.4796296296
Isoelectric point 12.0084838867
Runs 10
Runs residual 0.0224932249322
Runs probability 0.0399841017488
Amino acid sequence MPPLIQLNSSSKLDSKSNTQSVRQRNTGQGLKHTILERQTRAQWGQRVAGRGGS
Secondary structure LLLEEEELLLLLLLLLLLLLLEEEELLLLLLEEEEEEHHHHHHHLHHHLLLLLL
PRMN -
PiMo -