NONHSAT121376
Revision as of 06:37, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121376 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2650 nt |
Genomic location |
chr7-:72416689..72419484 |
Exon number |
3 |
Exons |
72416689..72419136,72419203..72419350,72419431..72419484 |
Genome context |
|
Sequence |
000001 GGAGAATGAA GACATGGTAC AAGATGCGCT GCAGCAGAAC CCGGGCGCCT TCAGCAGGCT AGCTCCCGCC CTGCCTGCCC 000080
000081 GGCCCCACCG AGGCCTGAGC ACGTTCCCGG GTGCCGAGCA CTGCCTCCGG GCTTCCCCCA AGACCACGCT TAGCGGTGGC 000160 000161 TTCTTCGTTG CTGTAATTGA ACGGGTCGAG ATGCCGACGT GACTCAGCCT CACAGGCCAA AGCATCAGCA CCAGAACGCA 000240 000241 CACCCAGCCC AGCCCCAAAG AGAAAGAAGA GAGCAAAAAG CTGCAGCCGG TGCTTGCACA CCGCCTTGCA CATAGCAGAG 000320 000321 GCTCCGGGCT CACTCCTTCC TGGTGGGAAA GGAAGATGCC TGTCCTCTCC GTGGAAGACC CTGGGCCCTC ACCGCAGGCA 000400 000401 GCAGTTTGCG TTTTGAAAGG TTATTGGGTC CCTTCCTCGG GCTGTGTTCT TGCTGGTGAG CAAAAGTGTT GCCTGCAGAA 000480 000481 ATAAAATGCA GAACGTACTC TACGATAGAT CACAGTTTTT TATTCTTAAT GTCACAAGCA GGAGAAAAAT CTCACATTCA 000560 000561 TACTAAAAAT TCCAACTAGA CTCAACAGGA ATGAAGTCTC TATTTGTAAT GGAAAGTCCC AGCCTCCCGC TGCCGTCCAG 000640 000641 TGCGTGTACT GTACACATCC ACACTCATTC TCACTCAGGG TTCCCGGACC GGCTGTCCTG CCTGCGGAAC TGAGGTAAAC 000720 000721 TAGCTCAGGT ACTGACACTA GGAGGGTCTA CCTTACATAA GGTACAGGTA GAAGCTTGAT TGCTAGGCCC AGGCCCACCC 000800 000801 AGACCCTCCA ATCCTAACAG GTATTTAGGC TTGAGGTTCA CTCCCTCCTC AGCTGCACAC GCAGCCAGGT ATTAACGAGG 000880 000881 ATCAGAGCTG TTCTGAGGGG TGGGAAGGAG CAGCCCCGCC ACCACTCACT CACCCTCAGT CACATCGGGG AGGGGGCACC 000960 000961 AGTTACATTT ACATCACATT ATTTATAAAA TAAGAATTAC ATTTCATATA ACATGGCCAG AAGGAGCTCT AGTCCCCCAG 001040 001041 GAAAGCTGCC GGGGACAGCA TTTGAGCCTC TTCTTTGCAC AGGCATAACT TAACTATACA GCTAATTCCT AGTTAATAGC 001120 001121 ATTTATACTT AACCACCTCA ATGAACCAAG CTTGAAGGAA TTTAAAAGGC AATTTAGCtt aaatacaaaa ataaattttt 001200 001201 gttaaaaaac gtttaaatat ttttttcttt taatttaGAC ACACGCATTC ATACTTCTCC CAAAGAGGTT GGGCGTGGCA 001280 001281 GCAAGGCGCT TGGGCCTGGG GTATGTGGTT TCAGAAGGAC GGAAGGAAAG GATGGGCTGC AGAGGGCCCT GTTTGGGAAA 001360 001361 AATAGGATTT TAAAAATATG GTTCATTAAT TTAGGTTTTC TAACATCTAC TTTGGGTGAT GTAGCCTCCA GTGAGGTCAG 001440 001441 TTAAGTGGGA CAGAAACGGC AGAGGGAAGA GGTCTTTGCT TCCCCTGGGC CCATTCTCCC TGGCTGCCAG CCCTTGAAGT 001520 001521 CAGAACACCA TGGGAAAATT CAGGAGTCGG CACTTGTAGC CGTCAAGTGG TGCTACTTTC CACATTCAAT TAGCGAGGCC 001600 001601 CCAGAAAACT TGAAACAGGA AGTCCGGCAC TACCAACATG CCGCCACTCA TACAACTCAA CTCTTCCTCC AAACTCGATT 001680 001681 CAAAGAGCAA TACACAGAGC GTCAGACAAA GGAACACAGG ACAAGGCTTG AAACATACAA TCCTGGAGAG GCAGACGAGG 001760 001761 GCCCAATGGG GCCAAAGGGT AGCTGGGCGA GGAGGCAGCT GAAGCAGCGG TGGGCATCCT GCCTGCTCCA AGAGCTTCTC 001840 001841 CCTTCACCCC TGGCTCTGCC AGGCTAACAG TCTTGAGCCA CCAAGCTCTG AGGGGCCAAA CTGGCAGAGG GTTGGAGATG 001920 001921 AAACATTGAT TCAGGCTTGG CAGGAAGAAA ACGGCAGGAG CAGCACCCAC TGGGGTCTCC AAGGCAAAGC TAGATTCAAG 002000 002001 GGCATTTAAA AACGAAGGAA TCCTGCAAGG AACTGGTGAG GGACACAGCA GCAAGAAATG GGGAAACAGA GTCCCCAGAA 002080 002081 GGGACCAGAG GAAGAGAACC ACTTCTCACA GCTAAGCCAA GCAAGATAAA GCTTTACGGA TAGCCCATTT CCCAAATCCC 002160 002161 ATCAGGTGCA CACCACCGAT CCAGGCGGGC TGGACCCTGC CCCCTCCAGC GACGACGGTC TCGGGGAAAG GTGGAAGGGG 002240 002241 CGCCTGCCTA AGGGTGTGCT AAGCGGGAGT CAGGGCAGCG GACACTATGT ACAGGTGTTT CCTTAGTTCT CCAGCCTCCC 002320 002321 CAGTAGAACT GTTCAAGTAG AGGTCCCGGG CTTTGGCCCT CCGCATCCTG CTTCCCCTTC CCTGAGGCTT GTGCTTCCTC 002400 002401 CAGAAGGGAA AGGGCCCCAG GGCTGCCACT GCCCCCTGGC GGCTGAAGCC AGAGATCCGG GGTAGGTTTG CTTTACGCAA 002480 002481 CTGGAAGGGT CCAAGGCTCT TCCTAGCAGG TGCCAAGGTC CAGATTTAGG GAAGGGGTGG GGGGAACAGG GACAGGGGAC 002560 002561 AAAGGCTACT TTTTGCGGGT GTGCTGCCTT CGGGCCTGCA GTCGCTGTCG AGCCCCTGGG GTCTTGGATC CCGCACCAAT 002640 002641 GGAAAATGAA |
Predicted Small Protein
Name | NONHSAT121376_smProtein_1637:1801 |
Length | 55 |
Molecular weight | 5960.6211 |
Aromaticity | 0.0185185185185 |
Instability index | 41.4796296296 |
Isoelectric point | 12.0084838867 |
Runs | 10 |
Runs residual | 0.0224932249322 |
Runs probability | 0.0399841017488 |
Amino acid sequence | MPPLIQLNSSSKLDSKSNTQSVRQRNTGQGLKHTILERQTRAQWGQRVAGRGGS |
Secondary structure | LLLEEEELLLLLLLLLLLLLLEEEELLLLLLEEEEEEHHHHHHHLHHHLLLLLL |
PRMN | - |
PiMo | - |