NONHSAT121668
Revision as of 06:38, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121668 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2064 nt |
Genomic location |
chr7-:77286977..77325582 |
Exon number |
2 |
Exons |
77286977..77288635,77325213..77325582 |
Genome context |
|
Sequence |
000001 TTCGGAGGTC AGAGCTCGGC GGGGTGCGGC TAGTGGCGGA GCGCGCTGCG AGGGGAGGGC TTTTCACTGT CGCTGGCGTG 000080
000081 AACTCGCGTG CCCGGTGGGT ATCAGGGAAG AACCCCCGCC CCGGACCCCC AGATCTGCCA TGGCCGAGGT AGCGATCGTC 000160 000161 TCTGCGGCCA CGAAGACTGT TTTAACTTGT ACCACTTTCC CTTCCATTTT TCCTGGGGTG CCTCTCACCC TGCATCTGCG 000240 000241 CGTTCAGCAA GCTGGATTTC GGGAATGCTC AGTTCAGAAG AGAAAAAATT GCCGGGAATC AAGTCCTTCT TTTTGTTAGT 000320 000321 CGGTAGTCGA TTGATGGGAA GTGTTCAAAA TCATTCGATG TGGTGACAAG GTATCACCAG TCTGTGGGTA CAAAAGGAGA 000400 000401 GTAACATGAA CGATTCAAAT TCCACTGGCT CTTGTTCCCA TGGATTCACA GAAGTTCAGC CCCATTTCAA AACTTCACAT 000480 000481 TTGCTTCTGG GAAGCCCATT CTGGAAAGTT TCTCTGTGGC CCTCTCCAGA AGGCAGCGCG ACTTCCACCC AGCAACACAA 000560 000561 GTCTCTGCAG CACCTGCCCC AGCAGCGCCA GCTGAGCCCC GGAAGCTGGG AAGGCTTAAG CTGACTCTTC TGCTGCACAT 000640 000641 AGCAAAAAAT GGTCATTTCT GTAGTTGCAG CTCCAGATCT ACAATAATCA ATCTATATCC ATATTTTATG GGGTTTTTTT 000720 000721 GAGACAAAGT CTTGCTCTGT TACTCAGGCT GGAGTGCAGT GGCATTATCA TCATTCACTT GTAGCCTTGA CCTCCCTGGC 000800 000801 TCAGGTGATC CTGTCACCTC AGCCTTCCAA GTAGCTGAGA CCACAGGCAT GCACCACTAA GCCTGGCTAA TTTTTCAATT 000880 000881 TTTATTTTTC GTAGAGACAG GGTCTCCCTG GGTTGCCCAA ACTGGTCTTG AATTCCTGGG CTCAAGCAAT CCTCCTGTCC 000960 000961 CGGCACCCCG AAGTGTTGGG ACTACAGGCA TGAGCCACTG TGCACAGCCC TTTTTGTTTT TGTTTTTGTT TTTGTTTTTT 001040 001041 TTTAAAGGTA ATTTCCCAGT GGAATCCTCG AGATTTCTTC ACGTTTTTGG AAAAATGAGT TACATTTTAG ATTGTTTTCC 001120 001121 TTTTTGGAAT TTAATGGTAT ACATTATATT ACATAGCTAT GTTGAGCTCT ATTTCTATTA CACTAAAAAG TAGGCTAATT 001200 001201 GTCTTAACTT TCATCAGTAA TGACGTTAAA TGTGTGAAGA TTATACTTGG AATAAAGCAC TTGGATTCAT TCATTTCTTC 001280 001281 AGTAAATATT TATTGAGCAC TAGTATGTTC CAACGAGTGT CTGTCTACAT TCTGGGGACA AGTGATGACT AAATCCCTGT 001360 001361 CCTCGTGGAG AGTTAACAAT CAACAAACTA ACAAACATTT AATTTATGTC ATCAACTCAT TTCCACAAAT ATAACAACAT 001440 001441 CTTGACTTCA AGTTTCCTGA GTTTCTGGTC TAAAGAATTG CTACCTTCAA GAGCTCAAAT CATTTGTTGG GGAGAGAGGC 001520 001521 CTGTGATATA TTTTCTCCTT TACAATGAAA GTAGCTGTAA AAAGAGGAAG AGAAATTCTG AGGGTAAAGA TAAAAAATGT 001600 001601 TGAAATCTTC TTTCTGGATT TCAGATTGAG TCTCTTGCCC TAATTGATGC AATTTACACT CCATGCATCT CCTTCCCTGG 001680 001681 ACCTTCTCCA GTTCTTGGGG ACTACAGATG AACTTACTTT TAATGCATTT TATGGCATTT GGAGGCCCTC CAGTGGACAA 001760 001761 ATACTATACC TGAAAAAAAT CCTTTTGCTG TGCTAAAGTG TTCAGGTGTG AAGTGTACTC ATGTTTGCAA ATCACTTTGA 001840 001841 AATATATAAA CAAAAATGAA TTAATGGATG AATAGAGTGA TGCATAGATC ATTAGACATG TGATAAAAAT AACTGTTAAT 001920 001921 TGTAGAATCT AGATGATGAG TATATTATAT GATATGGCCC ACTGTATAAT TCTTTCAACT TTTCTGTTTG AATGTTTGAT 002000 002001 AATAAAATAT TGAATAAAAA TCTTTTTGCT AAAGAAAAAA AAAAAAAATA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT121668_smProtein_989:1192 |
Length | 68 |
Molecular weight | 8273.7719 |
Aromaticity | 0.298507462687 |
Instability index | 57.3225373134 |
Isoelectric point | 8.64141845703 |
Runs | 10 |
Runs residual | 0.0059388919278 |
Runs probability | 0.0635400105988 |
Amino acid sequence | MSHCAQPFLFLFLFLFFFKGNFPVESSRFLHVFGKMSYILDCFPFWNLMVYIILHSYVEL YFYYTKK |
Secondary structure | LLLLLHHHHHHHHHHHHHLLLLLLLLLEEEEEELLEEEELLLLHHHHHHHHHHHHHHHHE EEEEEEL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLL LLLLLLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooo ooooooo |