NONHSAT122124
Revision as of 06:40, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122124 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5106 nt |
Genomic location |
chr7-:96594575..96608908 |
Exon number |
2 |
Exons |
96594575..96598430,96607659..96608908 |
Genome context |
|
Sequence |
000001 TTCAGACAGA GTCTTGCTCT ATTGCCCAGG CTGCAACTGG TGTGATCTCG GCTCACTACA ACCTCTGCCT CCTGGGTTCA 000080
000081 AGCGATTCTC CTGCCTCAAG CTCCCAAGTA GCTGGGATTA CAAGCATGCA CCACCATGCC TGGCTAATTT TTGTATTTTT 000160 000161 AGTGGAGACG GGGTTTCGCC ACATTGGCCA GGGTGGTCTT GAACTCCTGA CCTCAAGTGA TCCACCTGCC TTGGCCTCCC 000240 000241 AAAGTGCTGG GATTATAAGC ATGAGCCACT GCACCCAGCC TTATACTGAA CTTTCAATGG GTTCAATTCC ACTAGGAGCA 000320 000321 TAAAGGCCAC TGCATATGAG TTGTGGAAAG AAGAGATTAG AAGAAGGAAG AACTTGAGAT GAGTTCCTCC CTTCAACATT 000400 000401 CTGTCTCCTC CTACCTAGCA TCTTCTTTCT TTTAGTCTTT CTAGAATGTC CATCTGTTTT TGGCCATTGC GGAGAGAGAA 000480 000481 GCTGAGCTTT AAAGGAGTAG GAGCTTCAAA GGCGTAGGAG CTTCAAAATT CTTGTTTCTT CATGTTTGAT CACCCTTCTA 000560 000561 AACCTGTCTT CTGTTCCTTC TGCTATTCTT TTTTCTTAGA GCATAGGAAA GGGGAGCTTT TAAATTAATA CTTAAAGCAT 000640 000641 GGAAAAAAAG AACTTGAGAA GAAAGTAAAA CAAGGGAGAT GAGGCTAGTA AAGTAAGGAA AATGAAGAGG AAGAGGAGGA 000720 000721 AGGGTTAGCT TCTAAATTCC AAGTCAAATT GATATGGAAC AGGCAAGCCG CTTGTCTTAC TTAAACTTCA GAAAAGGATC 000800 000801 TGCTGAAACT TGATAGAAAT GGAAAGGGAA ATCCTTGGGG TGGGGAACCT CCAAACATTA GTAATGATAT TGAACAACTC 000880 000881 AAAGTATTGA GGAAATCTGC AGGCTACATG CCTGAAGATT ACCCATGCAG ATAGACCAAA AGGATTAGAA TTATCTGTTG 000960 000961 ATATTAGTAA TATTTATTGA CATCTAGCTA GTATTGGTAA TTTTAAGTTT TAGATTAATT TCTTTGGTAA TAGCTATGAT 001040 001041 ATATTTTATA GACAAGAATT ATATCTATAG GCTTGCTATC ATAGGCTCTT TTAATCAGCA TTAATTTAGT CTACTGATTT 001120 001121 TTAGCACATT TGAATCATTC ACTTATGCTA GGTAACTCAT TGCAAAATAA AAAGATGATT CCTGTATGTA TGGCAGCTAT 001200 001201 ACATTAAGGA GGAGTCTACC AGAATATGAA AAAGTCAGCT GACCTAAATA TTGCTGAGAC AAAGGAAAAC CCACTCCCTT 001280 001281 GGAGGAGCAT GACCTTTTCC TGTAATTCTT CCCACTGCTG TTGTTGAGCT CCTTGGATCC TGGCTCCTGG ACACCATCAT 001360 001361 CAAGAAGACT TTATGGATGG GCTGTCCACC CACTGAGAGA AGAGGAGCAT CAGCTACAGT TTCTCTCTAG ATTGCCTTCT 001440 001441 TCATTTTGAG TAATGACTGT CAGCAGGGTC AGATTAAACA CAAAACAACT GGACAATTGC TTGGAGGACT AAACTATAAG 001520 001521 GGCACTAACA TGTCAATAGT AGGCTAACAC ATCCATGGAA AATATATTTA CCAGCTCTTC TCTCAGGGAG GATTCTGTGT 001600 001601 GGGGTTGGAA GTAATGATTT GTTAAATTCC TTAGGGGTAG AAAGTAGGGC ATAATCAGAA TATAGAGGAA TATGCTGTTT 001680 001681 GACTTCAGGG TTTCTGTTTT TCTTACTAGG ATATATAAAA CAGGGACTCT AGCTAGATTG TTTATGACCA CAGAGGGTAG 001760 001761 GCTGAGTGCT CCCATGATCT TCCTGCTTGG TTCTTGCCCA TACAGAGGTC AGCCTTTCCT CTAATAAAGA TTGAACAAGT 001840 001841 AGTGGTCTGA GGGAGACACC AATTCATTAC CCTACATGTC TCTTCTCTGC ACTCCAGGGC TTTGATAATA AAGACACTGG 001920 001921 CAGACTATCT ATCTTCCATT TCTATAATGT GAGCCCTTAG GGAGTCTTCG TTCACTTGGG GGTGAGGGTC ATTGCTCACA 002000 002001 GAGTAGTTCA AGTCAAATGG AACTTGAACT CTTTGCCTAT GGGCCTGGTG GTCAGACTCT GTGTTGAGTT CATTAGATTA 002080 002081 TTGGAGACAC AAGGTAGAGC TGGATGCTTC AAAAATATTT GGCTAAAGGA TGACATTGCT GGTTATTTGT AGATAAAGCC 002160 002161 ATGATGGAAC CTGCTTGGAA TCATGAAATA TGGAACTGGT GGTCATGTTT AAAAATACAA CTAATAGTTA AGTACCTACT 002240 002241 GGACACTGTA GAGACTTAGG GGCTAGACAG ACATGGTTCC TGCCCCCTTG GAGCTTACAC TGTAGCTTCC CCTTAGGTAT 002320 002321 GAAGAACAGT GGCTACAACT AACAAATGGC CACAAAGATA TAATTGAGCC AGTGTTCCAA TTATTAGGGT AATTCCTATT 002400 002401 TCCTTAATCA TTCCTATTGA CCATGTTCTA TAAGCCTGCA TTCTATAAAT GGCGTATGAC CATGGGCTGT TTCCCCCCAG 002480 002481 CAAGTTGTAC AAAGTTCTGT GGTACCAGGG AAAGGGCTTA AGGTTAGCAG GGCCTCTGCG GAAGGACATA TGAAGTGACT 002560 002561 TGGGTTAGGA AACAGGAAGG GATAGGATTC AAGAACAGCT ATTGCTTCTG TTCTATATAG GAAACTGCAG CGTGAAAAAT 002640 002641 GCTGGGCTGG GAATTTTGAG ACCTGGGTTT TAGTTTGTGT TCTAATACTA ACAAGCTATG TGACTGTGGG TAAGTCATTT 002720 002721 CACATTCCAT TTGGATGCCT CTTGAGTGAC TCCAGGCCTC TCCAGCTCTA AAACATTAAG ATCAGGCCCT ACGCTACAGC 002800 002801 TGGCCAGTGT GTAATTCTTC TGTTTCTATG CTGTTAGGTC AAATAGATCT TCAATAGTTA CTTGATTGTT ATTACTTTTT 002880 002881 TCTGAAGTGG GTGTTTTATC AATGTTTTAG GATACAGTGA GTCTGCTTCT CCCCTTTGGA GTTAGGAAGG TTGTAGGAAT 002960 002961 ATACACTGTA GAGCATATGG GAGCTTTATC CCCTCCTTTT TTCCCCGCTA CCTTTCTCCC TCTCCTTCCC TTCATCACAT 003040 003041 TTCTATTGAG CATATGCCAT TGCCGTGTAC CAGGTGTGTG CTAGGTTTGG AGATACAAGG TAAACCTGAG ACTTTCCCAG 003120 003121 TCTCCAGGAG ACAAAACCCT AATTTCTTTC ATCTGCTGTC TTTCTCTTTG GAAAGAATCA ACGATATCCC AGGGGAATGT 003200 003201 GCCCATGTCC CAGGGTAACC AACTACAGAC AGATGCCCCA TTCTACTCAA GCAACTTTTA GAGTGCCTTG AGATACACAT 003280 003281 CAGATAATTA TGCAGGGCCA GGCATGGTGC TGCACACTTG TAATCACAGC ACTTTGGGAG GCCGAGGCAG CAGATTGCTT 003360 003361 GAGCCCAGGA ATTCAAGTGT AGCCTAGGGA ACATGGCAAA ACCCCAGCTC TACAAAAAAA TACACAAATT AGCTGCGTGT 003440 003441 GGTGGCCTAT GACAGGAGGC TGAGATGGGA GGATTGCTTG AGCCTGTGAG GTCGAGGCTG CAGTGAGCCG AGATCATGCC 003520 003521 ATTACTCCAG CCTGGGTGAC ATAGGGAGAC CCTGTCTTGA AAAAAAAAAA AAAAAGATAA TTATTCAGCC CTAGAGTCAT 003600 003601 TGTGAAAAGA TCTATCTTCA GATATAAGGA AGAAACAATC TTTTATTTCT TAGGATAAAT CTGTAGAAGG ACCTCCAGAC 003680 003681 AGTGAAGGCC ACTGACTACT TTATACTCTG TAAGCCATCC CTCCCTGGTA GGAAGGACTA TTTCCAATCT TACAGAGTAC 003760 003761 CTCTCAGCAA ATAGACGTTT TCACATATAC TGTGATTCAT ACATCCCTAT GGCTGGTGAC CTCTTTAAAA AGGAAAGGAA 003840 003841 AAAGCCTAAT CAAACAAAAA GATGCTGCTA GTAATTCTTA CCCTATTGTG AATCCTATAT AAGCAAATTT GTATCTTTGT 003920 003921 TTTTTCCTAC ATTAGCAGAT CTATTTGATG TATATCTCTG AGTGCAGAAA ATATTTTATG GAAAAATCAA TATATGGAAT 004000 004001 TTCAAATTCA GAATTGCTGA TACACACTAT TTGGTTTCAC AATTTTATCC TAGGAAATAG TATTAGAGAT TTCAATTTCT 004080 004081 GGCTTAAATG GTAGAATTAA TTACTCTTAA CTCTTAATTT TACTTCTGAG TTGAGGTCAA GGAACAGGCA GACACCTGCA 004160 004161 GTTAACGTCT ATACCTCTCC ATGGCCAAGA GTTTTAATTT TCTCGTCTTC AATTTTGTAG ATGTTCATCA TTACTAAATG 004240 004241 GATTGATTAG TATTTTATCT CCTCTCCTTG TCCTTACTTT CCCTCTGGTA AATATGTTAT AAACAGTGTA AGGCTCCTAA 004320 004321 GATAGAGTAG CTGGTAGGAC TTAGAAGAGA AACAAAGGGC ACTGATAACT CACATAAATG GAAAATTGGC TCTGGAATAA 004400 004401 CTGACAACAT ATTCAAGTAT TTTAGTGCAG TGTCACTCTC ATTAAGAAGA AGAGAATCAG TAAATCTATG TGACTCTAAA 004480 004481 CATTCTAATG AAAAAAGGAA TATTCTGCCA ATTATCTCAC ATTTCTAAAT ATCTGGATAT TGGCCATTGT AAAGACAAAA 004560 004561 CATACAGATG ATGGACTTGT CTTTCCACCT CTCATTTGCA TGGTTTGGAG CATTGTACCT CCAGCCATAG ACTCTAAGGC 004640 004641 AATTTATATT TGCTTCCTCT TCCCTCTTGA GAGAAAACGA AAATCTTATT TTTCCAAGCA ATTAAAACTC TTCTGCTTCA 004720 004721 GCTAGGATGA AAGAATTAGG AGTTCTGTCT CCTTGTATCT AATTGCATGT TTCATCTTTC TTGTTTTAAT GATTGACAGA 004800 004801 AAACTAATAA ACTGAGACAT CTTTGAATCC AGGTTGAATG TACTCTCTTG GTGGCCCCAT TGCTAATTTG TTTGACTATT 004880 004881 TTGCAGGATT TCTTACTCTG TAATGGAAAG GTTTATTAAA TATGAGGGGT GCAAAGCTTT CTGAATACTA ATGAACTTAT 004960 004961 TTGCCAAAAT TTAAATGTTC TTCTTGTCAG TGAATGTCTG TCTCTCTTAA CAGGATCCAA ATTGAATAAT GAAGAAAATT 005040 005041 AGACTCTATT GTACCCTCAG GAGAAATCGT GGTGAATCGT AATAGAATAC AGAGGGGGAA AGGGGT |
Predicted Small Protein
Name | NONHSAT122124_smProtein_125:322 |
Length | 66 |
Molecular weight | 6947.9041 |
Aromaticity | 0.0769230769231 |
Instability index | 61.6646153846 |
Isoelectric point | 5.83160400391 |
Runs | 13 |
Runs residual | 0.0497115384615 |
Runs probability | 0.042796189855 |
Amino acid sequence | MHHHAWLIFVFLVETGFRHIGQGGLELLTSSDPPALASQSAGIISMSHCTQPYTELSMGS IPLGA |
Secondary structure | LLLEEEEEEEEEELLLLEEELLLLEEEELLLLLHHHLLLLLLEEEELLLLLLLEEEELLL LLLLL |
PRMN | - |
PiMo | - |