NONHSAT122533
Revision as of 06:42, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122533 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
947 nt |
Genomic location |
chr7-:102729111..102730057 |
Exon number |
1 |
Exons |
102729111..102730057 |
Genome context |
|
Sequence |
000001 ATGGCAACTG AACAAAAGCT GGTGAGAGCT GTTAGAGTGT TTGAATTTGG TAGACCAGAA GTCCTGAAAC TCAGTCAGAT 000080
000081 GTTGCAGTAC CAGTTCCAAA AGACCATTAG TTGTAATCAA GGTTCATGCG TGTGGTGTCA ACCCCATGGA GACATACATT 000160 000161 TACTCTGGTA TTTATAATAG AAAACCACCT TATTCTATGC TCAGATGTAA CTGGGGTAAC GGAAGCTGTT GGAGGGAATG 000240 000241 CATCTACTTT CAAGAAAAGT GACAGTTTTC ACTACCGGCA CAATCTCTGG GAGCAGATTA CGCTGTTTAC AAACTGCCTG 000320 000321 AAAAACTGGA CTTTAAACAA AATGCTGCCA TTGGTATCCC ATATCTTACT GCATATCGAG CTCTGATTCA CAGTGTCTGT 000400 000401 ATGAAAGCTG GAGAGTGTTC TGGTTCATGG GGCTAGTGGA GGAGCTGCAG TAGCAACATG CCAAATTGCT AGAGTTTATG 000480 000481 TCTTAAAGGT TTTGGGCACA GTTGGTACTG AGGGACAAAA AGACTTTTGC AAAATGGAGC CCACAAAGTG TTTAATTACA 000560 000561 AAGAAGTTAA CTATGTTGAT AAAATTAAGA AATGTGTGAT AAGAAAGGAA TTGATGTGAT TATTGAAATA ATAGCTAATA 000640 000641 TAAATCTTAG TAAATATGCG AATTGTTTGT CATATGGAAG ATAAGTAATA GGTGTTGGCA ACAGTGGTAC CATTGAAATA 000720 000721 AACCCATGGG ACACTATGGC AAAAGAGTCT AGTAAAATTG TCGTTACTCT ATTTTCCTCA ACCAAGGAGG AATCTCAGCA 000800 000801 ATTTGCAGCA GCCTGTCAAG CTGGAATGGA AATTGGTTGG CTGAAACCTG TAATAAGTTC TCACTATATG TTGGAGAGGT 000880 000881 GGCCCAGGCT CATGAAAATA TCTCTCACGG CAATGGGGCT ACTGTAAAAA TGATTCTTCT CTTTTGA |
Predicted Small Protein
Name | NONHSAT122533_smProtein_125:385 |
Length | 87 |
Molecular weight | 9978.5155 |
Aromaticity | 0.104651162791 |
Instability index | 55.1802325581 |
Isoelectric point | 7.89752197266 |
Runs | 16 |
Runs residual | 0.0464248524818 |
Runs probability | 0.0313217629394 |
Amino acid sequence | MRVVSTPWRHTFTLVFIIENHLILCSDVTGVTEAVGGNASTFKKSDSFHYRHNLWEQITL FTNCLKNWTLNKMLPLVSHILLHIEL |
Secondary structure | LEEEELLLLEEEEEEEEELLLEEEEELLLEEEEEELLLLLLEELLLLEEELLLHHHHHHH HHHHHHHHHHHHHHHHHHHEEEEEEL |
PRMN | - |
PiMo | - |