NONHSAT122596
Revision as of 06:42, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122596 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3600 nt |
Genomic location |
chr7-:104650989..104654588 |
Exon number |
1 |
Exons |
104650989..104654588 |
Genome context |
|
Sequence |
000001 GGTACGCCCG TCCCGCTCCG CAGGGGCAGA GGGGGAGGGG ATGAAGCTGC CCGGCGCCAT TTTGCTTGTG GGCTGCCGCC 000080
000081 CGCCGTTGCC TCTCCGCGGA GGCTCGAAGA TAGCAAACTG GAGGCGGTGA GGGGGACGGA ATCTCTGTCT TTCTGACAAC 000160 000161 AGATGCATTC AACAATCCAC CGAAGGTTTG AGGAAGTGTC GGTATTCGGT GGGACTGGTT CTTTCCCCCT TTCCCCCAGT 000240 000241 GGCCCTCAAG TCTGGATATA GGTGAGCTTG GGCATGCCAG TATTGGGTGC ACGAACAAGG ACAGCAGGGC TTGGGAACGA 000320 000321 ACTCCCTCCC GTCACCCTCC GAAAGCGATA CACCTTCTCC CCCTCCCAAA CAACCCCAGT CCCGTCTCCC CGTTCCTCTC 000400 000401 CCCCTCCTCC CCCAGCCCAG TCTGGCCTCC AGCGCTGGGT GAACCCGGTT GGGGTGTCAC TCGACGCCCA CTAGGGGCTG 000480 000481 AGGAGGCTCC AGTGCGCAGG CTCCGGGCAC CGGATAAAAG CGGAGCTGGC GAGTCTAGTG CTGTCTCGAT GGAGGAGCAA 000560 000561 GAAACGGAAG AGGTCGGGGG GAGAAGCAGC CGGAAAAATG CAGCCACCGT CAACGCCGCC TCCCTGCCAC CGTGCTTCGG 000640 000641 GGTAAAAAGC TGCCGTTGCC GTCGGTGCAG TTGCCGTCGC TGCCTCCTAT ACTTCTCTTG GCCTCGGGGA AGGATTTCCC 000720 000721 CACCGGTGGG ACAATGTGCG GGGAGGGGAG TGGGAATTCC TTTATATGGC GGTGATTAAA CGAGGGAGGG ACAGACAGTG 000800 000801 ATCTCGAAGA AAAAAGGGGG AGACCAAAGA ATAAAAGAAG GGTTTCCCCA CTAAAATGAC ACGGCGATTC CGGCTCTTGT 000880 000881 TTTGGGGGTC TTTCCCCGAA ATGGTTTCCG TCTTCCCCTT GCCCCGCAGC GACCCAGAGC GCTGGGGGAA GCGGAGTGGG 000960 000961 GAGAGGCAGA GGCGGTCTCG GCAGCCAATC AGCGCCTGAT GTGTCCTGTC GGGCGCGTCG TGGTTGGCTG GCGATGACCT 001040 001041 CATCCTGCAG CAGCGGGTGG GGCCAAAGCC GTAGGGGGAG GCTGTTGCAA AGGTAGAGAG GGAGAAGTGA CGATGGTGAT 001120 001121 CGTTGCTGCC GCGGCCGATA TGGAACCCAA GCAGTGGCGA AGGGAATCGC AAGGCTCTTC CCTGACCATT TTCTACTGTC 001200 001201 CCTGCGCGAG GTGAGGGCCC CGGCTCGGCC TCTGCAAAAC TTTGGGGCGC TGGCGCGGAG GAGGAGACAG GATTTCTCCC 001280 001281 GTGACTTTTG TAACTGCGTC AGGGCAAGAT GGCGCTGGGT CTCTTTGGGG CGCGGGGGGA GAGGCACGTC CACCGCCGCA 001360 001361 GCGCATGTGA CCGGGCTGCA TTCCTGTGGG GTTTGGCTCC GACCCAGGCC GGGGCGGGGG AGGGGACAGG GCTTGGGCGG 001440 001441 AGGAGACTGT GGTGCGGTCG GCGTTGGCGG CCTGAAGAGG AAGAGATGAC TGTTGGAAAG CGTTCCCCTC CCCCATACGG 001520 001521 CAGAACAGCT GCGGCTCCCA GGGGAAAGCC CCCGCAGGAC AGTCCTCGTG GGGTGTGACG GCTGTTGGTG GAGAAGGTTT 001600 001601 GGCGCCCTAT TTTCTTATCT GCCTTTCTCC CCGCAAAGTA TACTTATGTA AGGTGGTAGT TCCCTGACGT GGGACTCGGA 001680 001681 ATCAACTAGG AGTCCTTGAG GGCCTCTGGG AGGCCTAGCG AGGGGTAGAC CAGCTTCTGG GGGTACAACG TCAAGGAGGA 001760 001761 TCGATTACTT TCTGAGGAAA CAGTTTCTCA GATTGAAATA GAAAAGTATT TCCAAAGTTT GGAAACAAAT TTAAAGGTGT 001840 001841 AAATAACACC CAGGAACACT TTAATTGCTT TGAAAAGGCA TAAGCAGCCA TCTGAATTTA AGGGCCCTTT TCAGACTCTT 001920 001921 CCTTCCTCCT GTGATTCCTG TTCTTTATTT CAGTTTTCTG TCTGTACATC CCTTAAGAAT ATAGTTTTGT CGGTGGGATT 002000 002001 CGCTCTTTTG TGCCCAGGCT GGAGTGCAGA GGCGAGATCT CGGCCCACTG CAACCTCCGC CTCCCCGGGT TCAGGCGAGT 002080 002081 CTCCTGCCTC AGCCTCCCAG GTAGCTGGGA TTACAGGCGC CCACAACCAC ACCCTGCTAA TTTTTTCTAT TTTTAGTAGA 002160 002161 GACGGGGTTT CACCCCATTG ACCAGGCTGG TCTCGAACTC TCGAGATCCG CCCGTCTCAG CTTCCCAAAG TGCTGGGATT 002240 002241 ATAGGCATGA GCCACCGCGC CGGGCCTGCT TTTTTTTTTT TTTTTTTTTT TTGCACTGGG CATTAGTAAT ACGGAATAAA 002320 002321 AGCCGTGTTT TAAACTGTAT TAAGTTGTAA GACTTTTCAG TACTTTCAAG TCTGCTTTCT TTCTGTTGCC CTTTTGTAGT 002400 002401 TTTTAAAAAT AAAAGATGCA ATTATAAGCA CTTCCGGTGA ATATTATTCC TTAAGGTTCC TGCATCATCA TGAAATTTGA 002480 002481 AGCACTTTTA TAGTAGTACA AACTATACTT TTAGCTTTTG AAATCTCGAT AGGAGAAAAT ATCCAGCAGT TTTAGGGGCT 002560 002561 ATTTTGGCAT ATTCATTAAG GTAGACTAAG TTTGTTTTTC GTTTTTCCCA CTTAGCCAAA CTAGTTAAAG TAGTCAAAAC 002640 002641 TAGCAAATAA TTTTTAAAGG GCTTCTCCTT TTGGGTGGTG TAGAGGGTGG GGAGTTATTC AACAAACACA TTTGCAGCCA 002720 002721 AAATCTGGCC TACTTCTTGG CAGAGCGCTT ATACTTGGTG CTACGAGAAA ATGATTGCTG GACCTGAAAA GAACCTGAGG 002800 002801 TCAAGGTTGT GCTATTTCCT TAAGTCTTAG TTGTAGGCTC TTGGTAGTTT GAAAACAAGA TTGGGTTTTT AATTCATTTG 002880 002881 TGTATCCTTA AATCCTCACT AGTTTTTGTG GATTTCTTTT TTCAGTTATA AGCAACTGAA TGTGGATGAG CTATAAATAT 002960 002961 TTAGTACAAA GAATGTAATT TGTCCACTCT GAATAGAAAG TAAGCATTAA GAACTCTTGA ATGTCTTCAA GGGTTACTTT 003040 003041 GTTACGTGTA AGATGTCTCC CCTTCCTTCA TAGCAGTTTT TATTCCTGCT TAAAAAGGGA ACTAAATATG AAGTCAGTAG 003120 003121 ATTTTAAGGT AATTTTCAGA ATGTTTCTAC TTTCACCGTG CCTTAATAAG GAAAAAAGGC CATTTTCCAA GCGAATGGAA 003200 003201 ACACCCTTTC CTTGTTTTGT GCCTTTAATC AGCGTGTACC TTCATTGTTC CTGATTGCCA AATCCACGAA CTTCTTGAGC 003280 003281 TCTCAATTTT TCTTGACTTT CCTATGGCAT TTTAAATACT GTTCATACTT GGAATTACTT TTCTTTGACT GCCTTCATAC 003360 003361 ATTCATATAT TCTGCCTGGG CAATTTCATT TGGGCCTATT ATGTTCCAAT ACCTCTCCAA TTTTCACCTC CATCTTAGCT 003440 003441 CTGCCAGCTT CAGTGCCACA GGTAGGCAAT GTAAAAGTTT ACTGGGGACC ACAGGCTTTC TGAGCTCAAT AAAAATACTA 003520 003521 AGCTTGGTAC TTGTTTTTTA AGAATTTTCT TCCCCCATCC CCTCACAAAG ATTATTTGAG TAAATTACAC CCCAACCTCC 003600 |
Predicted Small Protein
Name | NONHSAT122596_smProtein_3020:3253 |
Length | 78 |
Molecular weight | 9151.0043 |
Aromaticity | 0.12987012987 |
Instability index | 69.417012987 |
Isoelectric point | 9.89385986328 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0422026304379 |
Amino acid sequence | MSSRVTLLRVRCLPFLHSSFYSCLKRELNMKSVDFKVIFRMFLLSPCLNKEKRPFSKRME TPFPCFVPLISVYLHCS |
Secondary structure | LLLEEEEEEEEELLLLLLHHHHHHHHHHLLLLLLEEEEEEEEEELLLLLLLLLLLLLLLL LLLLLEELEEEEEEEEL |
PRMN | - |
PiMo | - |