NONHSAT122636
Revision as of 06:43, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122636 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1800 nt |
Genomic location |
chr7+:105573258..105575057 |
Exon number |
1 |
Exons |
105573258..105575057 |
Genome context |
|
Sequence |
000001 CTATTGCTCC CCTTCTCTCT TTGTACTCAG AAAATCCAGG AAATTCTTCC TCAAGAAAGC ATGACCCATT TCAGCCTAAA 000080
000081 AGCGTGCTTT TCTCTGGACT GTGCTGGCTT GAGAACGTAT TTCTTTTACC AAAAAATGAG TTCACAGTAA GTGACTCAGA 000160 000161 AGCATATGGA TGAAATTTCC TTTAAGCCAC TCAAGGGATT AGAAATTAAG GGAAAGAGTG CCTGGCAAAA TGCATTTGGG 000240 000241 GTTTTGCCAA GCCCAAACCA ACTGAGAAAT AGTTAAGACA CAAGGCAGAT CTCAAATGCT GCCAAGTTTA CCCATCTTAG 000320 000321 CAGGACAGGG ATTTATAATT AGAGCTGCTC AGAAAAGCAC TGCCTTACGG GTGGCAAAGG ACAAAAAAGG CTTTGTCCCC 000400 000401 AACATCTCCA CAGGCTGCGG TTTCCCAGAT GGGCCCTTAA CAGTGTACAC ACCCTCTCCA TCGCCAGGGT CCTCAAAGCC 000480 000481 ACCGCCTCTA CCAAGCAAGG TTCGACTTCT ACACCACGCC CCTGACATTC TCTCCAGGCC TCTTTTGTTT CTGGCCCAGG 000560 000561 CTGGATGCAT CACACTGTGA ATTCCTGGAT GAGGAAGAAC AAATCTTGCG GAGTGTTCTG GAATTACAGA GGAGAGCCAT 000640 000641 AATGGGAAAA TGTGACAAAG CAATTCCCTT CTCTGACATA CACATTTTAC CCCTGTCTCT CACCTTTGTC ACGTTTCCCC 000720 000721 ATTTTTTCAC CTTCTGTGGG TTTCTTTTTC TGTAAAATGA AGGGATTGGA TCTGCTGGTT TCAAACTGTG CTACCTGGAG 000800 000801 CCACTTGCGG GCCTGGCGGG GCCCAGTGGA AGTGGATGGG GAGATGGTGA GAAGGGCTCT CTTCAAAAAA AGCAGGAGGG 000880 000881 GGCTCCAACA TAGCATTTCA AGGAAATCAA GGGATCCAAA GTTAAACAAT TTGAAAATCA CAAGTCTGGA CGAAGTCTCA 000960 000961 TTGTTCTTTC CAACTGAACA CTGCCGGTGT GGTGTGCCTC ACTTCTCAGT CTCCATTCAC TAACCCAAAT ATCCCCAAAG 001040 001041 ATGTGCACCA ATTTTTCTGT CTAGCATTCA TCAGAGTGCT CCTGTGTGCC AGGCCCTCTG CTAAGCACTG GGCATACAGC 001120 001121 AGTGAACAGA AACCCCAGGG GGCTCATAGA CCAGTTGGGA AGATTGGCAT TAAACAAATG AATATGTAAA TCCAAATCAA 001200 001201 GAGGTATGAA CACCATGAAA GACAAAATCA TGGTTGAAAG TTGAGTGGGC CTGGGGTTGG AGAGATACTG CCCTAAGCAT 001280 001281 CTCCCCTCCC CACCTGGCTT GCCACTTGCC CCTTTATAGA ATAACTAATC GTTGTTCAGT CTTTGATAGT TTCCACTGAA 001360 001361 AACATCCCTC TTCTACCTGA CAGAGGAGGG TCAAGACACC CAGAGCACAA AGGAGCTGAT GGGTTTAGTT AGCTGTTACT 001440 001441 GCGGAAAGCC AAGAGGATGA GCTTGAGAGA ACAGACTGAG GGCTTTAGAT GGGTGAATGT GAGAAAGTCT ACAGTGCTTG 001520 001521 CTGTGCTGAG GAAAAAATCC AGGTGGATCA CCTGGAGGTG ACCCAAAGTG CCAATGAAGT GCATGTCAAT GGCCCTCTTC 001600 001601 ACATACTTCA CTACTGTATC TGGAGCTCTC CTGAACATCT TTCTCCCATT CCTCACTGAG TTTTGCTAGA CATGGCAAAT 001680 001681 GTTAACTCAT TACCAACTCT TAATTGTATT GCTGTTTCTT TGCCCCTGTC TAGCTCTTTC TATTTGTACA TTTTGTAAAG 001760 001761 AGAAAAGGAA TTTAAAAAAT AAAACCAAAA CAATCTCTGG |
Predicted Small Protein
Name | NONHSAT122636_smProtein_641:754 |
Length | 38 |
Molecular weight | 4252.0697 |
Aromaticity | 0.216216216216 |
Instability index | 50.5081081081 |
Isoelectric point | 6.68328857422 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.0394554218083 |
Amino acid sequence | MGKCDKAIPFSDIHILPLSLTFVTFPHFFTFCGFLFL |
Secondary structure | LLLLLLLLLLLLEEEELLLLEEEELLLHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToo |