NONHSAT123343
Revision as of 06:46, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123343 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2368 nt |
Genomic location |
chr7-:130038683..130041050 |
Exon number |
1 |
Exons |
130038683..130041050 |
Genome context |
|
Sequence |
000001 gatggctccc acatttttac tgtcataaat aggcttcagt ggacaCATTA GGCATAGAAG TTGTtctatt tcttcatctg 000080
000081 taaaatgggg attgtaatat ttactttcca gggtcatagg gataagagag ctaaaggatg taaagtccgg aactagtgcT 000160 000161 GTCTTTTAGA TCATGGTAAC ATCAGTTTGC AAAAGAAACG AATACCAGCT TGTGTGGTTT CCATGATGGG AAACCATCCA 000240 000241 GTCCCTGCTG GTGTGACGGT AGGAATGGGC TTGTCCATCG TTCCCGGGAA CTCAGACAGG TGGACCTGAC CTTTTATTCC 000320 000321 TTGGGGGTTT CTCGTAGTCT TGGGACATCA GCCCAGTGCC TTGGAACCTT AACTCATCTG ACTCTTAGAA AAATGCCCAT 000400 000401 GGCAAGATCA TCATTCTGTA TGACGATGAT GAAAGGCTGG CCAGTCAGGC GGCCACCACC ATGTGCGAGC GTGGATTTGA 000480 000481 AAACCTCTTC ATGCTTTCCG GAGGTGAGCA AGGTGATACT CTGCTTGGGA CTTCAAAGGC TGATCATCCT TCAGTCCCAC 000560 000561 CTGCATCCCC TTTTCTCTCT TGGTGCTCAG AATTCAGTGT TCTGGAAAGA GAAAAAGCCA TGCTGGCTGA AAGGAGTCAG 000640 000641 GAGTTATGTG AAACTTCCCT TAGCTTCATC AGCACATGTT TTTAATTCCT GATGTTGCTT CAGGGCTCTG TCACAAAGCC 000720 000721 CTAATGCTGA AGACTCGAGC AAAAGGATTT CTTGTGGAAT TCTCAGAATC CCATGTAACA ACAGATATTT TCTGGTATAA 000800 000801 TTTGCTTAAT GATGAAATAG TTAAGAAAGA TTTCATGTCC TTGTGTTGGC CTCAACTTGA TGACCAGAGA TTAGAAGACA 000880 000881 TGCAGGCTTC TTTCCAGGTT TTGGCCTGGC CTTGCCATAT TAATGCAGCT TTTTCTGATG ATTTTCCAAA CCTAGGTCTA 000960 000961 AAAGTCTTAG CTCAGAAATT CCCGGAAGGA CTGATTACTG GTTCCCTGCC AGCATCTTGC CAGCAGGCCC TTCCTCCTGG 001040 001041 GTCTGCCCGG AAACGATCCA GCCCCAAAGG GCCACCCCTA CCAGCTGAGA ATAAATGGAG ATTTACCCCA GAAGACTTAA 001120 001121 AAAAGATAGA ATATTATCTG GAAGAGGAGC AAGGGCCTGC AGATCATCCT AGTAAGATCT TTTGACCTTT AAAGATAATG 001200 001201 TTTGGTTTGC AGCTTTGAAT ATCACCTCAT CATATGAAAA CCTTCATCTC TTATATTTAG ATTCTTAAAA TACTAGGGAG 001280 001281 GTATGTTACA GGTGCTGGGG AGGGGAGGCA GTGGAGGTGA CCCCAGATAG TGGCAAGAAT TACGCATTGA AGAGAGACTT 001360 001361 TATCAAAACA TAGCGACttt tttttttttt gagacagagt cttgctctgt cacccaggct ggaatgcaat gggatgatct 001440 001441 tggctcactg caacctccgt ctccccggtt caagcgattc tcccacatca gcctcccgag taggtgggat tacaggtgcc 001520 001521 cgccaccaca ccaggctaat ttttttgtat tttaagtaga gacagggttt caccatgttg gccaggctgg tctcgaactt 001600 001601 ctggccacaa gtgatccacc cacctcagcc ttccaaagtg ctaggattac aggcatgagc caccacgccc agGCAAAAAT 001680 001681 GTAGAGACTT CATCAAAAAG TATATCTCAG GTAAAATTGA GGAGTTAAGC ATCAGACCTT CAGATTCCTT CTTGGAAAGT 001760 001761 TTTCGATTCC TTCTGCAGCT TTTGCTTCTC CACTCTGAGA GCCTCTGTGG TTTGTCTTCC TACCTTAGTT TCACCGTACT 001840 001841 GCTTTCTCTT TTCTTTCCCC AAATCACTCC TCGTCTGCAT CCTCTCTACC AAGGAAGTAG TGGAGGACAG ACTAGGTTTG 001920 001921 TTGGGGATGT TGGAGAGGAA GGGAAAAAAA ACCTATCTGG GTTTCCCTTC ATTTCTGTCC CCCTCCCCAC CTTCAGGCTG 002000 002001 ATCTCAAGGA TGAGGAGTAG GCCATCGTTG GCCTAAAGTA GATACTGCAT AGGACTTCAT TAGCTTAAAA GTGGTTGTAG 002080 002081 GCTAGGACTT CATTAGCTTA AAACTGTACT TGGCAGATTG TCCCTGGAAT CATTCTTGCA GCTCTGTTCC TTCTTTCTTG 002160 002161 CTCCCTTCAG GCCGACTGAA CCAAGCTAAC TCCTCCGGAA GAGAGTCCAA GGTGCCTGGT GCCCGAAGCG CTCAGAATCT 002240 002241 GCCAGGTGGC GGCCCCGCCA GCCACTCAAA CCCCCGCTCC CTCAGCAGTG GTCACCTGCA AGGCAAACCC TGGAAGTAAA 002320 002321 GACTTTGTCT CACTTAGGCA AATAAATGTT CTTCCTCTTT TCAGAACC |
Predicted Small Protein
Name | NONHSAT123343_smProtein_392:691 |
Length | 100 |
Molecular weight | 11133.2709 |
Aromaticity | 0.0909090909091 |
Instability index | 65.2535353535 |
Isoelectric point | 9.98504638672 |
Runs | 13 |
Runs residual | 0.00237670825906 |
Runs probability | 0.0339910045792 |
Amino acid sequence | MPMARSSFCMTMMKGWPVRRPPPCASVDLKTSSCFPEVSKVILCLGLQRLIILQSHLHPL FSLGAQNSVFWKEKKPCWLKGVRSYVKLPLASSAHVFNS |
Secondary structure | LLLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLHH HLLLLLLEEEELLLLLLEELLLLEEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |