NONHSAT124186
Revision as of 06:49, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124186 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1904 nt |
Genomic location |
chr7-:150773725..150776415 |
Exon number |
5 |
Exons |
150773725..150773919,150774000..150774867,150774966..150775179,150775649..150775788,150775929..150776415 |
Genome context |
|
Sequence |
000001 ccggcctcgc tagggtgcca ccccagattc ctgctaatag agtgccctag gaagccacca taatttgtca caattggtat 000080
000081 gagatgaaag cctatttgcc atctttgTAT GTACTCCCTA CAAACCGTTT CGATACCTCA TAGCCACATG ATACTTTACA 000160 000161 TGTCTCTAGT GTTTGCACTT AAACTCTAGC ACACCTTCCC GCTCAGGAAA CGGGAGAGGA GAAAGGTGGA GAATTCACCA 000240 000241 AGTAACCCCA TGATAAGAAC AGCAGCACAG CTCTGTTACC AGGCTGCCTT TTACCTCTCC CCCTCAGGCT TTCCATCTGA 000320 000321 TGGTCCCCTG GTGTGTGCCC TGGAACAGGA GCGAAGGCTC CGCCTCCCTC CGAAGCCACC TCCCCCTTTG CAGCCCCTTC 000400 000401 TCCGAGGTGG GCAAGGGTTG GAAGCTGCTC TAAGCTGCCC CCGTTTTCTG CGGTATCCAC GGCAGCATCT GATCAGCAGC 000480 000481 CTGGCAGAGG CAAGGCCAGA GGAACTGACT CCCCACGTGA TGGTGCTCCT GGCCCAGCAC CTGGCCCGGC ACCGGTTGCG 000560 000561 GGAGCCCCAG CTTCTGGAAG CCATTGCCCA CTTCCTGGTG GTTCAGGAAA CGCAACTCAG CAGCAAGGTG GTACAGAAGT 000640 000641 TGGTCCTGCC CTTTGGGCGA CTGAACTACC TGCCCCTGGA ACAGCAGTTT ATGCCCTGCC TTGAGAGGAT CCTGGCTCGG 000720 000721 GAAGCAGGGG TGGCACCCCT GGCTACAGTC AACATCTTGA TGTCACTGTG CCAACTGCGG TGCCTGCCCT TCAGAGCCCT 000800 000801 GCACTTTGTT TTTTCCCCTG GCTTCATCAA CTACATCAGT GGCACCCCTC ATGCTCTGAT TGTGCGTCGC TACCTCTCCC 000880 000881 TGCTGGACAC GGCCGTGGAG CTGGAGCTCC CAGGATACCG GGGTCCCCGC CTTCCCCGAA GGCAGCAAGT GCCCATCTTT 000960 000961 CCCCAGCCTC TCATCACCGA CCGTGCCCGC TGCAAGTACA GGTGGATGGG GCAGCCTGGG GCAAGGGGAG GGGCCAGCCT 001040 001041 GGGACCAGCA GAGTGGAAAA GCCAGAGGGA CCATGAAGCG CCAAAGCTAA GGAGCTCTCG GCCACCATAa aactgggccc 001120 001121 tgaagcagca gagggctttg cccagggtgg tggcactaga ctgggacaga ttaggatgag gtgccgggcc cttcctgcta 001200 001201 ctggtgtcct ttctcctcag tcacAAGGAC ATAGTAGCTG AGGGGTTGCG CCAGCTGCTG GGGGAGGAGA AATACCGCCA 001280 001281 GGACCTGACT GTGCCTCCAG GCTACTGCAC AGGTGAGCAA GGGGCAGGCG GCAGGCCCGG GGAGACGGAG CCCTGGCTAA 001360 001361 GGCCGCCGGC CCTGCTCCCC TCCAGACTTC CTGCTGTGCG CCAGCAGCTC TGGTGCTGTG CTTCCCGTGA GGACCCAGGA 001440 001441 CCCCTTCCTG CCATACCCAC CAAGGTCCTG CCCACAGGGC CAGGCTGCCT CTAGCGCCAC TACTCGAGAC CCTGCCCAGA 001520 001521 GGTAAAGGAG GCAGGGTGGG GGAGCCCTGG CCACCTTGCC CGCCATGCCC TGAGCCACGT CCCTCCCCCT GCAGGGTGGT 001600 001601 GCTGGTGTTG CGGGAACGCT GGCATTTCTG CCGGGACGGC CGGGTGCTGC TGGGCTCGAG GGCCCTGAGG GAGCGGCACC 001680 001681 TAGGCCTGAT GGGCTACCAG CTCCTGCCGC TACCCTTCGA GGAACTGGAG TCCCAGAGAG GCCTGCCCCA GCTCAAGAGC 001760 001761 TACCTGAGGC AGAAGCTCCA GGCCCTGGGC CTGCGCTGGG GGCCTGAAGG GGGCTGAGGG GTTGATGTGG GGTTCAGGAT 001840 001841 GGCCCCCCCA TGGGGGGTGG ATGATTTGCA CTTTGGTTCC CTGTGTTTTG ATTTCTCATT AAAG |
Predicted Small Protein
Name | NONHSAT124186_smProtein_1688:1816 |
Length | 43 |
Molecular weight | 4798.5222 |
Aromaticity | 0.0952380952381 |
Instability index | 81.3023809524 |
Isoelectric point | 8.18975830078 |
Runs | 7 |
Runs residual | 0.00949367088608 |
Runs probability | 0.0406540994776 |
Amino acid sequence | MGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG |
Secondary structure | LLLEELLLLHHHHHHLLLLHHHHHHHHHHHHHHLLLLLLLLL |
PRMN | - |
PiMo | - |