NONHSAT124520
Revision as of 06:51, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124520 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
3600 nt |
Genomic location |
chr7+:157820065..157823820 |
Exon number |
2 |
Exons |
157820065..157820168,157820325..157823820 |
Genome context |
|
Sequence |
000001 GATGCCAGGA GGGGCAGATG TGGATTGACG TGGCTCTCGG CCCCCATGGG CTGGTATTGG GCCTCCTTGG GAGCAGCCTG 000080
000081 AGAGTGCTCA TTCTTGGCCA AATCTTGTGA TTCAACCTCA ATGCTTCTGG AACCCACAAG CCACCCAGCC TCACTTTCTA 000160 000161 AAAATATGAT TGAGAAAGCA AGACAGAGTT TGGGACGGAG GTTTCTCCAG CGGAGCAGAG CCCTGGCATC CTGTGGAACA 000240 000241 TATTGTGAGT GTTCACAGCC GAGAAAGTAA GATGACTGGG ATGTCATTTT CAAAGAGGAA ATGGGCCCCA CCCCAACAGG 000320 000321 GCCACCGAGG GAGAATCGCA GGAGGCAGCT CCCCCAAAAC TGGGAGAAGG TCAGGCCTGG GTTCCCCCAT ACCGTCATGG 000400 000401 TCTTGAGTCA GAAACCAGAG ATTTGTAAAC AGCATCAAAA GCCTTCACTT CCTTCTGCAG CCTTAAAGTT TGAACTTTAC 000480 000481 TTACATTTTA GACATGAAAA GTACACCAAG AAAGCCACCA TGGTGAGTTT TAGGCAGAGA CCCTCTTGTG AATAATTCGT 000560 000561 CTATGATCCA AGATGGCCAG ACAAGAATCA GGGCCCAAGC TTTTTCTCCC CAGTGTCACA TCCACGCTGC TGTCTCCTCT 000640 000641 CCAGCTCAGA CCAAAATTCT CTGGACATTT TCATGGCTGA AAACCCCACC AGAACGCTGG CCCTGACAGG ACCCTCTCCT 000720 000721 CAAGTCCTGA GGACCCGGCT GCGGCCAGCC AGAATGTAAA CTACAGCTCG CAGAAGCAGC AGGCATGGAG GAAGAGGCAG 000800 000801 GAGAGCAAGA GCAGAAGCTC GAAACCTTCA AAGGGAGCTT GAAGAACAAG GCCAGGAGAA GCAGCGGCCA GGCCCCACCG 000880 000881 GTTTCCTCCT TTCCCTCCTG AATCTAGGAC AGAGGCCATT TCAGACGAGA GAGGAAAGAA CAACAAAATG AACTGCAGGA 000960 000961 GAAGCAGCCG GAGCCTGCAA GGCCCAGCCA GAGACGGCAG AGGAGAGAAC CGCAAGCCAG GAGCAAGGAG GAGACAGGTG 001040 001041 GACTCCACTA ACCAACCGAC GCAGCCCAGC GGAGACAGGC GGACTCCACT GACCAACCGA CGCCACCTGG AGAAAGTAAA 001120 001121 TATTTAACTG TCAGAAGGAA AACACTGTTT GAACAGTAGT GGCCTTAGGA AGAAGGCCCT AATTTTTTTG AACACTGACC 001200 001201 GGGGGCCATT CTTTACCCAG AGCTACTATG TCCCGCGCAA GGCAACACTG GCTGAAGCCC AGGAGGGCGG GGCAGCTGCA 001280 001281 GACCCTCAGG AGCCTCTGCT GGCTCAGGGA GCGTGGGGAG AGTCCAGCGT GCACCAGAAG GAGGGAGGCC ACCTCTCCTT 001360 001361 GCGGCATTAG GAGACCAGGG TCTCTGAAAG GGCGGGGACC ACGGCCAGGC CAGAACCACC ACATCACCAG GCTGAAGGCT 001440 001441 GGTTAACCTG GTGGAATCAG CTGTCTTCAT GTTCAAACCA GCACATGGGG CTATTTTGCT CCAGTCACCT GGTGTGACAT 001520 001521 GAGCCACTGA GACTCGAACA CCCCTGCTCT GGAGCAAAGA AGAACCCACA CCTCTGTCCT GCCTGGCAGC CTCCCCACCA 001600 001601 CTCGCCGTGG GCACGGGGTC CGTATCCACT CGCCGGGGGC ACGGGGTCCG TATCCACTCG CCGGGGGCAC GGGGTCCGTA 001680 001681 TCCTCTCGCC GGGGGCACGG GGTCCGTATC CTCTCGCCAG GGGCACGGGG TCCGTATCCA CTTGCTAGGG CATGGGGTTC 001760 001761 ATATCCTGTC CTCTGTCTCC TCTAAGTGTC CCTTAAACTT AAGGCCAATC CTATGATTTC CCTCTAAAAG CATTCTTCCG 001840 001841 AATTCTACCC CAAAGAAACC AGTGACATTT CTCAACATCA GGCTTCCTAA TCTCTGCAGG CCGCCTGAAG AAAAAGAAGA 001920 001921 GATATGTGTA TGGCCATGCC ATTTGGAAAT AGAAGAAAAG CCTTTAACCG CCTTCTACCT TCAGCTGTTT TTGCCAAGCA 002000 002001 GAGAAGGTCC AGAAAGCACC TTCAAAGGGG CTGGGAGCTC TGGCCCTGCC CATCCACACA GCAAATACAG CAAGCAGAAA 002080 002081 TAACACGTTC ACAGGGGCTG GAGGCTCCTG TCCTGCCCAT CCACACAGCA AACACAGTAA CCAGAAATAA CACGTTCACA 002160 002161 GGGGCTGGGA GCTCCGGCCC TGCCCATCCA CATGGCAAAC ACAGCAACCA GAAATAACAC GTTCACAGGG GCTGGAGGCT 002240 002241 CCTGTCCTGC CCATCCACAC AGCAAACACA GCAACCAGAA ATAACATGTT CACAGGGGCT GGAGGCTCCT GTCCTGCCCA 002320 002321 TCCACACAGC AAACATAGCA ACCAGAAATA ACACGTTCAC AGGCTTCTCC TCCCCACTCC CAACTCAGCT GCAAAACAGC 002400 002401 TGATAAAATG AGGATGGGCT CTATGTAAGT AAACAGTACT CGATCTACCA GTTTACGACA TCATCAAAGA CATGTAGAGA 002480 002481 GAAAATACAT ACACAGGTAA TAATAACAAT GATAATTCTA ATACTATTTT GTTAGATTAG AAGCATTTTT CCTGGACAGA 002560 002561 AGCAACATCA CCTGGGGTCC CAGTGGAAAG CACGGGCCAG GCGTGCTCCC TGTGACCAGG TCAGAGTGCA GAGCCCGCCT 002640 002641 GGTGACCTCA TTTCCTTAGG GCAATTGTAC CTTCTGTCTG GAGCCAGGTC CCTCTTAAAG GTAGAAGACT GCAGAAAATA 002720 002721 ATTCACCAGA AGCAGGCATG GTGCATCCCC AGGACGGATC CTTCACCGCA CCCGAGAACC CGCAGGATGA GGCAGCTCTG 002800 002801 CGCAAGCACC TGACCCCCTG CAGAGCTGAG ATGGCTGCTC GGGGACTATG TCCCCCAGCA AAGCACAGAG CTGAGCCAGC 002880 002881 TGCTTGGGGA CTATGTCCCC CAGGAAAGCA CGTCTGAGTC TTGGCTCCAG CTCCTGTGTA TGGGATGTGA TTTGGAAATG 002960 002961 GTCTCCGAAG AGGGAAGCCA GTTAAAGATG AGGCCATCAG AGTGGCTCCT AATCCAGGGA CTGGTGTCCC TAAGAAGGAG 003040 003041 ACACTGGACA GAGACAGAAG TGCCCAGTGG GAAGGCGAGG CCAGAATTCC CGAGAACACC TGGTGACCCA GCAGAGGTGG 003120 003121 GAGGGAGGCC CCTGTAAGCC GAGGAATGGC AGGGGTGTCA GGGCCACCAG AGGCTGGAGG AGGCAGGAAG GACCCTCTCT 003200 003201 GGAGCCTTCA GAGATGCACG GCCCCGCTAA GACCTTGATC TCAGACCCTG GGGGGTGCAG GGCCTGGAGA GCTTTGCACT 003280 003281 GTTCTAAGCC TGCCAGTGTG CGGGGCTCCG TTGCCAAAGC CTTGGGCACT GCACGCGCCA TCTCAGACCC TCTGGCCCCA 003360 003361 CACAGCCAGA GCTCAGCGAT GAGCCAGGCC CACAGCTCTT CCTCAGGGCC CTCGTTTTCT CTCTCTGCAA GCCTTCTCCT 003440 003441 TTCTAAACTG TTGTTGCTAA GTCAGAAAGA GAAGAGAAGG CATCACGTTG AATAATATCC TCGAGTGATA AATCTGCAGT 003520 003521 ATCTGCTGAA GGTCCACAGA TAATGTGTTT AATTTGACAA ACCAGGGACA AGAATGATGA ATAAAACACC ACTTGCTGAT 003600 |
Predicted Small Protein
Name | NONHSAT124520_smProtein_2939:3136 |
Length | 66 |
Molecular weight | 7302.2731 |
Aromaticity | 0.0461538461538 |
Instability index | 80.0753846154 |
Isoelectric point | 5.75164794922 |
Runs | 9 |
Runs residual | 0.0118269230769 |
Runs probability | 0.0383815187737 |
Amino acid sequence | MGCDLEMVSEEGSQLKMRPSEWLLIQGLVSLRRRHWTETEVPSGKARPEFPRTPGDPAEV GGRPL |
Secondary structure | LLLLEEEELLLLLLEEELLLHHHHHHHHHHHLLLLLEEEELLLLLLLLLLLLLLLLLLLL LLLLL |
PRMN | - |
PiMo | - |