NONHSAT124520

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT124520

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

3600 nt

Genomic location

chr7+:157820065..157823820

Exon number

2

Exons

157820065..157820168,157820325..157823820

Genome context

Sequence
000001 GATGCCAGGA GGGGCAGATG TGGATTGACG TGGCTCTCGG CCCCCATGGG CTGGTATTGG GCCTCCTTGG GAGCAGCCTG 000080
000081 AGAGTGCTCA TTCTTGGCCA AATCTTGTGA TTCAACCTCA ATGCTTCTGG AACCCACAAG CCACCCAGCC TCACTTTCTA 000160
000161 AAAATATGAT TGAGAAAGCA AGACAGAGTT TGGGACGGAG GTTTCTCCAG CGGAGCAGAG CCCTGGCATC CTGTGGAACA 000240
000241 TATTGTGAGT GTTCACAGCC GAGAAAGTAA GATGACTGGG ATGTCATTTT CAAAGAGGAA ATGGGCCCCA CCCCAACAGG 000320
000321 GCCACCGAGG GAGAATCGCA GGAGGCAGCT CCCCCAAAAC TGGGAGAAGG TCAGGCCTGG GTTCCCCCAT ACCGTCATGG 000400
000401 TCTTGAGTCA GAAACCAGAG ATTTGTAAAC AGCATCAAAA GCCTTCACTT CCTTCTGCAG CCTTAAAGTT TGAACTTTAC 000480
000481 TTACATTTTA GACATGAAAA GTACACCAAG AAAGCCACCA TGGTGAGTTT TAGGCAGAGA CCCTCTTGTG AATAATTCGT 000560
000561 CTATGATCCA AGATGGCCAG ACAAGAATCA GGGCCCAAGC TTTTTCTCCC CAGTGTCACA TCCACGCTGC TGTCTCCTCT 000640
000641 CCAGCTCAGA CCAAAATTCT CTGGACATTT TCATGGCTGA AAACCCCACC AGAACGCTGG CCCTGACAGG ACCCTCTCCT 000720
000721 CAAGTCCTGA GGACCCGGCT GCGGCCAGCC AGAATGTAAA CTACAGCTCG CAGAAGCAGC AGGCATGGAG GAAGAGGCAG 000800
000801 GAGAGCAAGA GCAGAAGCTC GAAACCTTCA AAGGGAGCTT GAAGAACAAG GCCAGGAGAA GCAGCGGCCA GGCCCCACCG 000880
000881 GTTTCCTCCT TTCCCTCCTG AATCTAGGAC AGAGGCCATT TCAGACGAGA GAGGAAAGAA CAACAAAATG AACTGCAGGA 000960
000961 GAAGCAGCCG GAGCCTGCAA GGCCCAGCCA GAGACGGCAG AGGAGAGAAC CGCAAGCCAG GAGCAAGGAG GAGACAGGTG 001040
001041 GACTCCACTA ACCAACCGAC GCAGCCCAGC GGAGACAGGC GGACTCCACT GACCAACCGA CGCCACCTGG AGAAAGTAAA 001120
001121 TATTTAACTG TCAGAAGGAA AACACTGTTT GAACAGTAGT GGCCTTAGGA AGAAGGCCCT AATTTTTTTG AACACTGACC 001200
001201 GGGGGCCATT CTTTACCCAG AGCTACTATG TCCCGCGCAA GGCAACACTG GCTGAAGCCC AGGAGGGCGG GGCAGCTGCA 001280
001281 GACCCTCAGG AGCCTCTGCT GGCTCAGGGA GCGTGGGGAG AGTCCAGCGT GCACCAGAAG GAGGGAGGCC ACCTCTCCTT 001360
001361 GCGGCATTAG GAGACCAGGG TCTCTGAAAG GGCGGGGACC ACGGCCAGGC CAGAACCACC ACATCACCAG GCTGAAGGCT 001440
001441 GGTTAACCTG GTGGAATCAG CTGTCTTCAT GTTCAAACCA GCACATGGGG CTATTTTGCT CCAGTCACCT GGTGTGACAT 001520
001521 GAGCCACTGA GACTCGAACA CCCCTGCTCT GGAGCAAAGA AGAACCCACA CCTCTGTCCT GCCTGGCAGC CTCCCCACCA 001600
001601 CTCGCCGTGG GCACGGGGTC CGTATCCACT CGCCGGGGGC ACGGGGTCCG TATCCACTCG CCGGGGGCAC GGGGTCCGTA 001680
001681 TCCTCTCGCC GGGGGCACGG GGTCCGTATC CTCTCGCCAG GGGCACGGGG TCCGTATCCA CTTGCTAGGG CATGGGGTTC 001760
001761 ATATCCTGTC CTCTGTCTCC TCTAAGTGTC CCTTAAACTT AAGGCCAATC CTATGATTTC CCTCTAAAAG CATTCTTCCG 001840
001841 AATTCTACCC CAAAGAAACC AGTGACATTT CTCAACATCA GGCTTCCTAA TCTCTGCAGG CCGCCTGAAG AAAAAGAAGA 001920
001921 GATATGTGTA TGGCCATGCC ATTTGGAAAT AGAAGAAAAG CCTTTAACCG CCTTCTACCT TCAGCTGTTT TTGCCAAGCA 002000
002001 GAGAAGGTCC AGAAAGCACC TTCAAAGGGG CTGGGAGCTC TGGCCCTGCC CATCCACACA GCAAATACAG CAAGCAGAAA 002080
002081 TAACACGTTC ACAGGGGCTG GAGGCTCCTG TCCTGCCCAT CCACACAGCA AACACAGTAA CCAGAAATAA CACGTTCACA 002160
002161 GGGGCTGGGA GCTCCGGCCC TGCCCATCCA CATGGCAAAC ACAGCAACCA GAAATAACAC GTTCACAGGG GCTGGAGGCT 002240
002241 CCTGTCCTGC CCATCCACAC AGCAAACACA GCAACCAGAA ATAACATGTT CACAGGGGCT GGAGGCTCCT GTCCTGCCCA 002320
002321 TCCACACAGC AAACATAGCA ACCAGAAATA ACACGTTCAC AGGCTTCTCC TCCCCACTCC CAACTCAGCT GCAAAACAGC 002400
002401 TGATAAAATG AGGATGGGCT CTATGTAAGT AAACAGTACT CGATCTACCA GTTTACGACA TCATCAAAGA CATGTAGAGA 002480
002481 GAAAATACAT ACACAGGTAA TAATAACAAT GATAATTCTA ATACTATTTT GTTAGATTAG AAGCATTTTT CCTGGACAGA 002560
002561 AGCAACATCA CCTGGGGTCC CAGTGGAAAG CACGGGCCAG GCGTGCTCCC TGTGACCAGG TCAGAGTGCA GAGCCCGCCT 002640
002641 GGTGACCTCA TTTCCTTAGG GCAATTGTAC CTTCTGTCTG GAGCCAGGTC CCTCTTAAAG GTAGAAGACT GCAGAAAATA 002720
002721 ATTCACCAGA AGCAGGCATG GTGCATCCCC AGGACGGATC CTTCACCGCA CCCGAGAACC CGCAGGATGA GGCAGCTCTG 002800
002801 CGCAAGCACC TGACCCCCTG CAGAGCTGAG ATGGCTGCTC GGGGACTATG TCCCCCAGCA AAGCACAGAG CTGAGCCAGC 002880
002881 TGCTTGGGGA CTATGTCCCC CAGGAAAGCA CGTCTGAGTC TTGGCTCCAG CTCCTGTGTA TGGGATGTGA TTTGGAAATG 002960
002961 GTCTCCGAAG AGGGAAGCCA GTTAAAGATG AGGCCATCAG AGTGGCTCCT AATCCAGGGA CTGGTGTCCC TAAGAAGGAG 003040
003041 ACACTGGACA GAGACAGAAG TGCCCAGTGG GAAGGCGAGG CCAGAATTCC CGAGAACACC TGGTGACCCA GCAGAGGTGG 003120
003121 GAGGGAGGCC CCTGTAAGCC GAGGAATGGC AGGGGTGTCA GGGCCACCAG AGGCTGGAGG AGGCAGGAAG GACCCTCTCT 003200
003201 GGAGCCTTCA GAGATGCACG GCCCCGCTAA GACCTTGATC TCAGACCCTG GGGGGTGCAG GGCCTGGAGA GCTTTGCACT 003280
003281 GTTCTAAGCC TGCCAGTGTG CGGGGCTCCG TTGCCAAAGC CTTGGGCACT GCACGCGCCA TCTCAGACCC TCTGGCCCCA 003360
003361 CACAGCCAGA GCTCAGCGAT GAGCCAGGCC CACAGCTCTT CCTCAGGGCC CTCGTTTTCT CTCTCTGCAA GCCTTCTCCT 003440
003441 TTCTAAACTG TTGTTGCTAA GTCAGAAAGA GAAGAGAAGG CATCACGTTG AATAATATCC TCGAGTGATA AATCTGCAGT 003520
003521 ATCTGCTGAA GGTCCACAGA TAATGTGTTT AATTTGACAA ACCAGGGACA AGAATGATGA ATAAAACACC ACTTGCTGAT 003600
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Predicted Small Protein

Name NONHSAT124520_smProtein_2939:3136
Length 66
Molecular weight 7302.2731
Aromaticity 0.0461538461538
Instability index 80.0753846154
Isoelectric point 5.75164794922
Runs 9
Runs residual 0.0118269230769
Runs probability 0.0383815187737
Amino acid sequence MGCDLEMVSEEGSQLKMRPSEWLLIQGLVSLRRRHWTETEVPSGKARPEFPRTPGDPAEV
GGRPL
Secondary structure LLLLEEEELLLLLLEEELLLHHHHHHHHHHHLLLLLEEEELLLLLLLLLLLLLLLLLLLL
LLLLL
PRMN -
PiMo -