NONHSAT124792
Revision as of 06:52, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124792 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1350 nt |
Genomic location |
chr8+:6693045..6728126 |
Exon number |
5 |
Exons |
6693045..6693139,6693690..6693743,6699190..6699489,6702284..6702451,6727394..6728126 |
Genome context |
|
Sequence |
000001 GCCCCTTCCC CTGCACGCGG CCCCGCGTCG GGGAGGTTTC CGGCCCGGGG CCCGACTGCG GGTGGCATTT CTGGCTAAGC 000080
000081 CGTTAGGCGC GAATTatatg gagatatata cacacacgta tCTGaaaaca ttctgacgtt ttaaaaacgg agcaccagag 000160 000161 gagggggact tcatctgact tgttcagcac tgtctcccag gccctggcac agagggagca ctcgatacac accgatgggc 000240 000241 tgaaggtgtg aatGGATCTG GGGACTAGAG TGATGGTTAT TTGGCAGACA GCATGCCCCG CCTGGGCAGT AGCCGTGAAG 000320 000321 ACTCTTCTTT TCCTCTCCTC GCCTGCACTC TTTAGGATTG AACAGCATTG GTTCAATGCA TATTCTGGGA GCACAGAGAA 000400 000401 AAAAGGGATC AAGTTCCACC ATTATGCAAA AGGGACTCCT GTAAGCCAGA CCCTGAGCCG TTGTCAAAAC ACAGCTTAAT 000480 000481 CCCCATTCCC TGGGCCCGAG ACCCTGCAGC CCCCACGCTG CCCGGCTTCC GGTCTTACCT GGGGCAACCT GACCAACAAG 000560 000561 AACGCGGAAG GCCAGGAGCC AAAAACAGAG ACTCCTGATG GGTAACAGAA GGAAAAGact tggaggctgc catttctcca 000640 000641 agtagtcctg gAGATTCTCA AATGCTAAAG TTAACCAACA CAGTGCCCTA AGACCAGAAA GGAGAAAAAA TGGAAGTTCT 000720 000721 GGGTCCTGCC AAAGGACTAT TTCACTGAGC AGACTGCTGA GACCTCTGAA TTATGTGGAC ACTTGAGAAT CAGTCATGTG 000800 000801 TTGGggccgg cgtcgtggct catgcctgta atcccagcac tttggcattt tgggaggcca aggcgggtgg atcacctgtg 000880 000881 gtcaggagtt cgagaccagc ctggtcaaca tggtgaaacc ctgtctttac taaaaacaaa aacaaacccc aaaaattagc 000960 000961 caggtatggt ggccggcacc tgtaatccga gctagtcggg aggctgaggc aggagaactg cttgggcttg ggaggcagag 001040 001041 gttgcagtga gccgagattg tgccactgca cttcagcctg ggcgacaaga gtgaaacacc agctcaaaaa aaaaaaaaaa 001120 001121 aaaaaaaaac caaaaaaaaa aaaaCCAAAA TCAGTCACCT GTTGGTTTGT GGATCAAACA AAGTGGAGGT GACATCACTG 001200 001201 AAGCCTAGGA CATCACTCCC CTTTTCCAGG CAGGCTTTGT GGTTCGACCT GTCTCACGTT CCAACCCATG CACCCTAACC 001280 001281 CCCTACTTCT TTACCTCTTC CAATTGAGAC ACAAGATTCA TTTTGGCCCA AAGGAGGTAT ACTTCAAAAG |
Predicted Small Protein
Name | NONHSAT124792_smProtein_251:478 |
Length | 76 |
Molecular weight | 8427.6768 |
Aromaticity | 0.12 |
Instability index | 47.8693333333 |
Isoelectric point | 9.69610595703 |
Runs | 9 |
Runs residual | 0.0289361702128 |
Runs probability | 0.0608942275609 |
Amino acid sequence | MDLGTRVMVIWQTACPAWAVAVKTLLFLSSPALFRIEQHWFNAYSGSTEKKGIKFHHYAK GTPVSQTLSRCQNTA |
Secondary structure | LLLLLEEEEEELLLLHHHHHHHHHHHHLLLHHHHHHHHHHHHHLLLLLLLLLEEEEEELL LLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiii |