NONHSAT125047
Revision as of 06:53, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125047 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1496 nt |
Genomic location |
chr8-:11181376..11189666 |
Exon number |
2 |
Exons |
11181376..11182006,11188802..11189666 |
Genome context |
|
Sequence |
000001 GTCCCTCCCA ACCCCCGGGC TCCCAAGTTC TATCTCACTC CTCCACCTTC CCTGTCCTCT CACAGCTGAG GTTCCGGGCT 000080
000081 GTAATGATGG CAATGCTGCC CAGCACAACC CCTGCCCCCA TGATGTCAGA AAGTGCCACA GTCTCATGGA GCATATAATA 000160 000161 CTGCAGTATA AGGGCCACAA CCACCTCGGA ATGCAGGACA GCGCACACCA GGGCAGGGTG GGCCTTGGTG ACCGCATAGC 000240 000241 CCACACATGT GAAGGAGACC AAGGCGAGGA TCCCCTCTGC CCCCACACAA CTCCAACTCA GGAGGTCACT GGGCAACACG 000320 000321 GGGGTCTGCA GCACAAAGAG GCCTGGCACA CAGCCCAGCA GCCCCACCAA GCCAGATAGG AAGGCCACTG TTGGGAGGCA 000400 000401 GGAGGGAAAG TGCAGAGAAC GATAGACCAG AAGCCCCAGG GACAGCGCCA GGCCTCCCAG GAAAGCCTGC ACATAGCCCA 000480 000481 GGGTGGTGTA GACACCTGTG GTCCCCTCCT GTAGTGTCCA GAGTCCAGGT CCCAGAATGA TGATTAGTCC TAGGATGCTG 000560 000561 CCCAACAGTC CACACCACTC GTAGCCACCG AGACCCTGGC TCTCAAGGCA GAGGGTGAGG ACAGCGGAGC ATACGGTGGA 000640 000641 AGAACCTTTG CGAACAGTGG CAGCGTTGCC AGCGGGCACC ACCTGAACTG CACTGTAGGC ACATCCAATG CTGAGGACGT 000720 000721 TGAGCAGGGC ACAGAAGCAG GCCCAGCCTC GGATGTCAGG AGGTCCCAGA AGGGGGTCGC CACGCAGTTT AAGTAGCAGG 000800 000801 GCAATAGGGA GGTGGAAGAG GCATCGACAG ATGAGCAGCT CCAGCGAGGG CAGGTTGGAA CCCTGATGGA CATTTCACAC 000880 000881 AACGCAGAGC TACGAGAACA TCTCTTATGC TCCTTGCCAT GGGATTTTAA TGCCCCAAGG TTCATAACTA CAGCAAAGAA 000960 000961 AGTAAGTCAA AAATAAACTG AGCTTAAAGA AGGTGGCAGG CCAATTTTCC CAAAAAGACT GTGGACTGTG GGCTGCTGTG 001040 001041 TAGCCTTTGC TACAAGGCTG AGGAAGCAGA AGAAAGATGA ATTGGGCAAT TGGTGATGAA AAGTATTTGC CATTTTCAAA 001120 001121 GGCTTCTCAG TGTGGCCATA GATTTTGCTA GTCaattttt aaaaaattat atttttaGCT CAACACACAG CTCTAAAGCA 001200 001201 GGGTTCAGTG TAGTGTGTTC TCTACCGAAA TGGTTATATA CAGATGGTAT GGAAATGGTT TTAAAGATTA CTCATAAACT 001280 001281 ATCCTTTTAA AGAAAAACTA GACTCGGTCA TATTTGTTAA AATGAGCAAT GTCACCAAAC AGAAATGTAG GTGGGAAATA 001360 001361 CTGAACCACA AACATTTGGA GTTGCAGGCA TAGACTAGCA GAGCATGAAT AGTCATCACT GTTTCTATAA TACTGAAACA 001440 001441 CTCAAATCTG TTTCTGAGGT TTAAAACACA GAGCTATATT ATATTCATAA ACTTCC |
Predicted Small Protein
Name | NONHSAT125047_smProtein_707:865 |
Length | 53 |
Molecular weight | 5904.7005 |
Aromaticity | 0.0192307692308 |
Instability index | 117.290384615 |
Isoelectric point | 12.4274291992 |
Runs | 8 |
Runs residual | 0.00347674923946 |
Runs probability | 0.0309243066596 |
Amino acid sequence | MLRTLSRAQKQAQPRMSGGPRRGSPRSLSSRAIGRWKRHRQMSSSSEGRLEP |
Secondary structure | LLLHHHHHHHHLLLLLLLLLLLLLLLLLLHHHHHHEEELEELLLLLLLLLLL |
PRMN | - |
PiMo | - |