NONHSAT125882
Revision as of 06:56, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125882 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1786 nt |
Genomic location |
chr8-:30599880..30601665 |
Exon number |
1 |
Exons |
30599880..30601665 |
Genome context |
|
Sequence |
000001 CCGGCCGCGT TTTCCGGGAA GGAAGTGGAA CTCTTCTTGC CGCGGGCCGG CTGGGAGAGG GTCAATAACG TGGTAAATAC 000080
000081 TGACGGCCGT GTCGTTATTG AGGGGGAGCT AAGCCCCGTG TTTTAAAGTT ATAGTCTGTA GCCGTGTTTC AGAAGAAAGG 000160 000161 CAAGTCGTCC CCCAAGTCAC ATGATGTCCA GAGGAGCCTG GGCTCTAGAG CGGTGGCTCC CTGGAGGGTA GCAGGGCAGG 000240 000241 GGCTGCCCCT TCGGTCTTTG CAGCGTCTGT GAGAAAGCGC TTTCCAGAGG GAAATGAAGC CGAAGAAAAA GCTGATGCTG 000320 000321 TGAGGAGGCA GCCTGGGCCC CCCGGCCTTG TGGCCGTATA GGATGAATGT GGGCTATAAC ACCTTCCTTA TCTCCCTAAC 000400 000401 GGTTCCTGGT TCCTGGCCCC GTCCGCAGTC TCTGGTTCCT GCGGAAAGAC AACTCGAAAG TGGGGCCTGG CTCCAAATAC 000480 000481 CTGCCCCCTA ACACGCACGT CCTAATGCCA GGTCCTGGAG ACCCGCTACC CCTTGTTCCG CCCCTTTTCA GTTTTGCCTG 000560 000561 CACGCGTTAT TGTTAACCTT GACTTCATAG TTCCATGACC TCATTGCCGT CCTATAACTC ACCACTGTGC ACTTCTCCCA 000640 000641 AGCTACTGAG GTCCTCCCAA TCTACAACAT TTCGTACTTG GAAATTATCT TTCCTggcca ggcgcggtgg ctcacgcctg 000720 000721 taatctcagc actttgggag gccgaggcgg gcggatcaca aggtcaggag ttccagacca gcctggcaaa tatggtgaaa 000800 000801 ccccgtctct actaaaaata caaaaattag ccgggtgtgg tggcggtcgc ctgtaattcc agctattcgg gaggctgagg 000880 000881 caggagaatt gcttgaaccc gcatgcggag gttgctttga gccgagtttg caccactgca ctccagcctg ggcgacagaa 000960 000961 tgagaccccg tctcaaaaaa aaaaaaaaaa gaaagaaaga aaTTATATTT CCTggctaag cgcggtggct cacgcctgta 001040 001041 atcccaacac tttgCAAGAA AAAAGAAAAT TCTTTTTCCT GACCCATCCA TCTAGCATCC CACCTGACTA TTCAGTTTAG 001120 001121 TTCATCTGAA ATTTATTGAG CTCCACAGTT TGGTACTCTA CAACTCTTGG ATATTCAAAT ATTTACAAGT TACTGAATTT 001200 001201 GTCCTCAAGA AACTCAGCTT ATCCGACTTT GTGGTTCTAT GGAGAAGAAA AAAAAAAACt gggaaagata gccctgtaag 001280 001281 caaataaaca taatgcagtt cctgagtgct atgatagaga tatacacagg gtgttgcaga accataccca gaaggcttgc 001360 001361 aaaaggcttt ccaaaaggaa gtcacgccta cgttgtgttc aaaggttagg aatctgggca aggatgtccg ggaagggtgg 001440 001441 gatttcaagt ttaggaacct gagtgcaaag gAACTACCAG TGATTATTGC TGCAGTTTAG AGCTTGAggc cgggcgcggt 001520 001521 agctcactcc tgtattctca gcactttggg aggcggaagg aggcagattg cttcagctca ggagttcgag acccctctgg 001600 001601 gcaacatagc taaacctgtc taaaaaaaaa aaatagctgc gcgtgatggc gtagcctgtg ctcccagcta ctcaagaggc 001680 001681 tgaggtggga gaatcacttg agcccaggag gtcaagtctg cagtgagctg agatcatgcc agtgcactcc agcctgggcg 001760 001761 atatagtgag accctgtctc taaaaa |
Predicted Small Protein
Name | NONHSAT125882_smProtein_362:490 |
Length | 43 |
Molecular weight | 4622.2623 |
Aromaticity | 0.0952380952381 |
Instability index | 64.5666666667 |
Isoelectric point | 5.89788818359 |
Runs | 7 |
Runs residual | 0.00949367088608 |
Runs probability | 0.0390895096777 |
Amino acid sequence | MNVGYNTFLISLTVPGSWPRPQSLVPAERQLESGAWLQIPAP |
Secondary structure | LLLLLLEEEEEELLLLLLLLLLLLLHHHHHHLLLLEEELLLL |
PRMN | - |
PiMo | - |