NONHSAT126099
Revision as of 06:57, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126099 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1318 nt |
Genomic location |
chr8-:38291865..38293182 |
Exon number |
1 |
Exons |
38291865..38293182 |
Genome context |
|
Sequence |
000001 TTCTAATGAG GACATAAGTG AGGGACACTG GAAAGACCAA AAGAGAATGG AAAGTACTGA CATGGTAGTT GCAGGGTGCT 000080
000081 AGTGAGCAGT CATGCCCCCA AATCAGCCAC CTTACATAGA ACTCCCCAAG TTCAGGGCCA CTGGATGGGG TTGTGACGCA 000160 000161 GTCAAGCAGG GCCCAGAAAG CATACAAGCA GTTGGTTTCA TCTCCTGTAA GAAAGTGGCA TCATCCCTGC TTTGTAAACG 000240 000241 GAGAACCTGA CACACACCAA GAGCACTCCT AGCCGTGGAA AAAAGCCGCT AGAACCCGAG GTTAGTCTGA TTTTTGGTTC 000320 000321 CTCTGAAAAT TAGCTTTTGC TGGATGCTAG ATTCAGTTCT GGACTTACTG AGTAGTCTCT GGGTTTTTGA CATTGTTAGG 000400 000401 CACTGTGGGA AAATTATAAC AGGTACGTCT GCGCTGAGTT GCTTGCTAAT TCCTAGGAGA GACTTGGACA TTTTGGACAA 000480 000481 TTAAGAAGCA ATACAggcca ggcacggtgg ctcacgtctg taatcccagc actttgggag gctgaggcgg gtggctcatc 000560 000561 tgaggtcagg agttcgagac cagcctgacc agcatggtga aaccccatct ctactaaaaa tacaaaatta gccaggcgtg 000640 000641 gtggcacatg cctgtaataa tcccagctac tcgggaggct gaggcaggag aattgcttga actggggagg caaaggttgc 000720 000721 agtgatccga gatcacgcca ttgcactcca gcctgggcaa caagagtgaa attctgtctc aaaaaaacaa acaaacaaaa 000800 000801 agaaGCAATA CAGCTCTTTG AGAAAGATGC AGTCATAAGT GGTGCAGAGT TGCAGTCTGC CCATTCCTGC TCCTCACTCA 000880 000881 TCGCTGTTCC GAACAAGTCA GCCAGGAAGC CGCACTGCAC CAAGGCTTTT AAAGATACCA GAAAACACCT GTGAAGCTGG 000960 000961 AGGTGACCAT TCACCAAATT CGAATCCCTC TAATGATCCG CAGCGTAAAA TCCCTGGAGA AGGTGTGTGC TGACTTGATT 001040 001041 CAGAGGAGGA AAGGAAAAGA ATGTCTAAGT GAAGGGACCA GTTTGAATGC CTGCCAAGAC TTTGAGAATC ACTATAAGAA 001120 001121 AATCTCCTTG TGGTGAAGGT TCAGAGACAT GGGATCGTTT CCAGATGAGA ATCCACAAGC TACCCACTGA CTTGCACAGT 001200 001201 CCTTCTGAGA TTGTTAAGCA GTTGACTTCC ATCAGTGTTG AGCCAGGAAT TGAGGTGGAA GTCACCATTG CAGATGCTCA 001280 001281 AAGTCAACTA TTTTAATAAA CTGATTAGCG GTTGttat |
Predicted Small Protein
Name | NONHSAT126099_smProtein_992:1135 |
Length | 48 |
Molecular weight | 5457.2931 |
Aromaticity | 0.063829787234 |
Instability index | 62.0425531915 |
Isoelectric point | 8.95770263672 |
Runs | 7 |
Runs residual | 0.0173404255319 |
Runs probability | 0.0418275418275 |
Amino acid sequence | MIRSVKSLEKVCADLIQRRKGKECLSEGTSLNACQDFENHYKKISLW |
Secondary structure | LLLLHHHHHHHHHHHHHHHLLLEELLLLLLLHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |