NONHSAT126099

From LncRNAWiki
Revision as of 06:57, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT126099

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1318 nt

Genomic location

chr8-:38291865..38293182

Exon number

1

Exons

38291865..38293182

Genome context

Sequence
000001 TTCTAATGAG GACATAAGTG AGGGACACTG GAAAGACCAA AAGAGAATGG AAAGTACTGA CATGGTAGTT GCAGGGTGCT 000080
000081 AGTGAGCAGT CATGCCCCCA AATCAGCCAC CTTACATAGA ACTCCCCAAG TTCAGGGCCA CTGGATGGGG TTGTGACGCA 000160
000161 GTCAAGCAGG GCCCAGAAAG CATACAAGCA GTTGGTTTCA TCTCCTGTAA GAAAGTGGCA TCATCCCTGC TTTGTAAACG 000240
000241 GAGAACCTGA CACACACCAA GAGCACTCCT AGCCGTGGAA AAAAGCCGCT AGAACCCGAG GTTAGTCTGA TTTTTGGTTC 000320
000321 CTCTGAAAAT TAGCTTTTGC TGGATGCTAG ATTCAGTTCT GGACTTACTG AGTAGTCTCT GGGTTTTTGA CATTGTTAGG 000400
000401 CACTGTGGGA AAATTATAAC AGGTACGTCT GCGCTGAGTT GCTTGCTAAT TCCTAGGAGA GACTTGGACA TTTTGGACAA 000480
000481 TTAAGAAGCA ATACAggcca ggcacggtgg ctcacgtctg taatcccagc actttgggag gctgaggcgg gtggctcatc 000560
000561 tgaggtcagg agttcgagac cagcctgacc agcatggtga aaccccatct ctactaaaaa tacaaaatta gccaggcgtg 000640
000641 gtggcacatg cctgtaataa tcccagctac tcgggaggct gaggcaggag aattgcttga actggggagg caaaggttgc 000720
000721 agtgatccga gatcacgcca ttgcactcca gcctgggcaa caagagtgaa attctgtctc aaaaaaacaa acaaacaaaa 000800
000801 agaaGCAATA CAGCTCTTTG AGAAAGATGC AGTCATAAGT GGTGCAGAGT TGCAGTCTGC CCATTCCTGC TCCTCACTCA 000880
000881 TCGCTGTTCC GAACAAGTCA GCCAGGAAGC CGCACTGCAC CAAGGCTTTT AAAGATACCA GAAAACACCT GTGAAGCTGG 000960
000961 AGGTGACCAT TCACCAAATT CGAATCCCTC TAATGATCCG CAGCGTAAAA TCCCTGGAGA AGGTGTGTGC TGACTTGATT 001040
001041 CAGAGGAGGA AAGGAAAAGA ATGTCTAAGT GAAGGGACCA GTTTGAATGC CTGCCAAGAC TTTGAGAATC ACTATAAGAA 001120
001121 AATCTCCTTG TGGTGAAGGT TCAGAGACAT GGGATCGTTT CCAGATGAGA ATCCACAAGC TACCCACTGA CTTGCACAGT 001200
001201 CCTTCTGAGA TTGTTAAGCA GTTGACTTCC ATCAGTGTTG AGCCAGGAAT TGAGGTGGAA GTCACCATTG CAGATGCTCA 001280
001281 AAGTCAACTA TTTTAATAAA CTGATTAGCG GTTGttat
[back to top]

Predicted Small Protein

Name NONHSAT126099_smProtein_992:1135
Length 48
Molecular weight 5457.2931
Aromaticity 0.063829787234
Instability index 62.0425531915
Isoelectric point 8.95770263672
Runs 7
Runs residual 0.0173404255319
Runs probability 0.0418275418275
Amino acid sequence MIRSVKSLEKVCADLIQRRKGKECLSEGTSLNACQDFENHYKKISLW
Secondary structure LLLLHHHHHHHHHHHHHHHLLLEELLLLLLLHHHHHHHHHHHHLLLL
PRMN -
PiMo -