NONHSAT126624

From LncRNAWiki
Revision as of 06:59, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT126624

Source

NONCODE4.0

Same with

,

Classification

sense

Length

577 nt

Genomic location

chr8-:54960523..54965458

Exon number

3

Exons

54960523..54960678,54963572..54963748,54965215..54965458

Genome context

Sequence
000001 TATTTCCGAT ATTTGCCTGA TTTGATTTGA CACCAGCCAC CAAGTTTGAT TTTTTTATGG ATATCATTAG TAACAAGATA 000080
000081 TTCCCTAAAT TGCTGTGGGC AAGCATGTGT GTTCCATTGA CTTTCCCTGC TTGTCTTTTC AGGGAGGAGC TTTATCTTTA 000160
000161 TATACTGCCC TTACCACACA GCAGAAACTG GCAGGTGTCA CTGCACTCAG TTGCTGGCTT CCACTTCGGG CTTCCTTTCC 000240
000241 ACAGGGTCCT ATCGGTGGTG CTAATAGAGA TATTTCTATT CTCCAGTGCC ACGGGGATTG TGACCCTTTG GTTCCCCTGA 000320
000321 TGTTTGGTTC TCTTACGGTG GAAAAACTAA AAACATTGGT GAATCCAGCC AATGTGACCT TTAAAACCTA TGAAGGTATG 000400
000401 ATGCACAGTT CGTGTCAACA GGAAATGATG GATGTCAAGC AATTCATTGA TAAACTCCTA CCTCCAATTG ATTGACGTCA 000480
000481 CTAAGAGGCC TTGTGTAGAA GTACACCAGC ATCATTGTAG TAGAGTGTAA ACCTTTTCCC ATGCCCAGTC TTCAAATTTC 000560
000561 TAATGTTTTG CAGTGTT
[back to top]

Predicted Small Protein

Name NONHSAT126624_smProtein_56:319
Length 88
Molecular weight 10033.8847
Aromaticity 0.16091954023
Instability index 54.0287356322
Isoelectric point 7.87469482422
Runs 16
Runs residual 0.0456486042693
Runs probability 0.080159203321
Amino acid sequence MDIISNKIFPKLLWASMCVPLTFPACLFREELYLYILPLPHSRNWQVSLHSVAGFHFGLP
FHRVLSVVLIEIFLFSSATGIVTLWFP
Secondary structure LLLLLLLLLHHHHHHHLLLLLLLLHHHHHHHHHHHLLLLLLLLLLEEEEEHHHHHLLLLL
LEEEEEEELEEELEELLLLLEEEEELL
PRMN LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLHHH
HHHHHHHHHHHHHHHHHHHHLLLLLLL
PiMo iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooooTTT
TTTTTTTTTTTTTTTTTTTTiiiiiii