NONHSAT126708
Revision as of 06:59, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126708 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2520 nt |
Genomic location |
chr8-:57430878..57472382 |
Exon number |
3 |
Exons |
57430878..57432579,57432680..57433126,57472012..57472382 |
Genome context |
|
Sequence |
000001 ATGTTTGCCA AAGAGTGCAA AGTTTCAGTT ACATGGGAGG AATCAGTTCT GGTGGTTTAT TGCAAAACAT GGTGACTATA 000080
000081 GTTAATGTAC TATGTATTTC AAAACATCTA AAAGAAAAGA TTTTAAGTGT TCTCACTACA AAGCAATGAT AAATATTTGA 000160 000161 GATGCTGAAC TTTTTAATAC TTACATTCTT AAGTTTTTCA AGGCTTTTCT AATAAGTCTG GCATTCCTGC CCTTGGCAGT 000240 000241 GTGAGATGGA AGATGATGTC GCAAGGGTGG CCGAGAAGCA GCTGGGCTGA GCTGCTAAAA GCACAGAGAC CGGGGCCAGA 000320 000321 CTCCTCAGCC TGAAATCCTG CTTCCACTAA GTACCAGCTG GGTAACTTCA GGTGGAGCCC AGTTGACAGG AAATGTTTCT 000400 000401 CCAGAAGCTG AAAAGCTGCC TGGTAAAGGC CTTTCATAAA ATGGTCTGCG TTTGGGACCA GGAAGACAGA AGACTCCTCA 000480 000481 AGAAGAGAAC TGGAACCTTA ACCCACTTCA GACTTCTTCA TGTCTGAAGC TTATTTCCAC CATCCCATTG AGAACCAAAG 000560 000561 AAGCGAGCTC CTTGGAGAAT CGGCTCCCAC CTGGACCTTC TGTTTATCCT TCCAATAGCT GCTGCATTCA TCCTTCCCAG 000640 000641 CTAATGACAC TTCCAGCCTT TCGTGTTTCA AAGTATCACG GACTTTGCAA AAGATTCCAG GTTTCTATGG AGCAGATAGT 000720 000721 ACTTTTAACA ATCAACATGT GCATTATTAT TTCCTCCTAA GGCATACTTA GACATCAATG CATGCTACAG CAAGGCAACT 000800 000801 TATCTCACCC TCACCAAGAT ATTCTGCACT TTCAGTGGCA AAATTTTAAA GAAAAGGAGA CAAAATGGAA CACAAATTCA 000880 000881 ATATGACTAT TGTCATCCTT CCCTCCCAGG AAGTGTAGGA ATCATCCAAA GTGGTAAAAG AGCAGCGCTT CTAAACTCTG 000960 000961 ACTTCACATG GAAAATAACG CGACTACTAA AACTGATAAC AATAGCAGTC CATGCCATTT GACAGGGGTG TGTAGGAGAG 001040 001041 GTGGTGAGCA AGCTGAAATC CCTTCAGGTA TTTGCAGAAC TTCTGAGCAA AAGCTAAAGC TAAAATTAAC ATTAAATATG 001120 001121 CAAAGTATTT TTAACCCAAC ATAAATTAAC AATGTTCCTA TTTCAATTCT ATTGCTCTTG GGATGACTAT GTCCTTTGGA 001200 001201 AAATGTTTAA ATAACTTAAG ATTTCCGTCA TGAGTTTACT ATTTCAAAAC TTATTTTTTT AACTGCAAGA TACCTTTTTA 001280 001281 TGTTACCAGG AGTGTTACCA GCTAGCTGCC AAAACCTGGT TGAAGTTCTC CCACTTTATA TTGTAAATGA TTACATAGTT 001360 001361 TATTAGTAAT TGTGTCCCCT GTCCACCCAC TGGTCCATTT GGATGGGAAA ATTTTCAAAA TAACTTCATA AGAAAATGAT 001440 001441 AAGAAAAATG TGGTCACCGG TATCATGAGG AACTTCCAGA CAGCTCAGCA CAGAAAAGTT GGTTTTAAAG TCCTCGAAAA 001520 001521 CGTTACTGGT AATGAGCTTC CACTCCTTTA GTCGTTGTGC ATAGATACAC CACAGAGTAA GGTTATAAAA ATAAAAGTTG 001600 001601 TTTCAGGAAA TTTCCCATTG CTTTATTACA TGATCAATGA GAGTAAAGAG AAATGGAAGT TGACGGGATA GGAATGAGGG 001680 001681 ACCTGCTGGA AGAGTGATCA CAATATCCAA AGGAAATTTA AAATGCCTGT TGAAAGTGAC ACACTGACTC AGCATTGTCA 001760 001761 CTAACACAGA ATCACCACAA TAAAACTGCC CTGCCCTGTG GCTCCTGGCA CCTCATGTCT CTTTAGGTTA AGCAGAGAGA 001840 001841 GGTCTGTGTT GCTTTGGAAC AAGGTGCAGC CTCCCCCTAA GCTACAGAGA GGCTCTGAGC AAGGACCAGC CCCCAGGGTG 001920 001921 CAGCCTTGCC CACCCTCCAC AGGCTCCAGA GCAGATGGGG TGGCTCTAGA GAGCAAATGG TCAAAACTTC TAGCGCTAAA 002000 002001 TAGAGCTTTA ACATGTCTCA GATACTAGCA AAATAGAGAA GCCTCAGATG GCTTTAGGTC TGGAAGTGTG TTGCTAAAAA 002080 002081 TGCTAAAAAT TTAACAAACT TTTATAAATC CTTAAGAGAT CTTTTTCAGT TTTCTGAAGT ACCGTTAATT GCCCATGTGT 002160 002161 TTCAACTTGC AGACAGGCAA GAATTTGGCT TTGTATGTTT AAAAATATGT ACATCTTGGT TCATAATGAT GATTTATTTC 002240 002241 CAAAATGGTG ACTCATACTA GGATTACATA TAAAACATCA TATGTGGGCC TTATATGTAA TAATGTGTAA GTATAGTATA 002320 002321 TTAATTACTC TGACATAACA TGGGCAGAGA TTTGTATTAA TTTATTTCTA TTTCATCTAA TCAATATTTT ACTTAAGTCT 002400 002401 AAAACCTTAT ATATATATTG ACATGTATCA TCGTATATAT AAACATTGTA TCTATTGAAC TGAGCAATCT GTAGTTTATT 002480 002481 TTAAATTCTG ATACATTAAA GATGTGGAGA ACTACATGAA |
Predicted Small Protein
Name | NONHSAT126708_smProtein_392:526 |
Length | 45 |
Molecular weight | 5355.4691 |
Aromaticity | 0.0909090909091 |
Instability index | 54.8545454545 |
Isoelectric point | 10.3060913086 |
Runs | 8 |
Runs residual | 0.0187165775401 |
Runs probability | 0.0182498675146 |
Amino acid sequence | MFLQKLKSCLVKAFHKMVCVWDQEDRRLLKKRTGTLTHFRLLHV |
Secondary structure | LHHHHHHHHHHHHHHHHEEELLHHHHHHHHHHLLLLHHHHHHLL |
PRMN | - |
PiMo | - |