NONHSAT126822
Revision as of 07:00, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126822 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2444 nt |
Genomic location |
chr8-:61314730..61326377 |
Exon number |
3 |
Exons |
61314730..61317808,61320914..61321056,61326115..61326377 |
Genome context |
|
Sequence |
000001 AGCTCTCACC TAATGATCTC CCTACTCACT CCTGACCAGG ACGCAGGTCA TTCCCCATAA TAATTAGCTC ACAGGCAGAG 000080
000081 TTTCCAGGCG CTTCCAGGAG CATCAATCAC CGGGATGAAT GGGAAGCCCG TGTGTGGGAA CTGCAGGGGG AGCTGGGTGC 000160 000161 AGAGCCACCT CAGCCCTGTC ACCCTGCGCG TGTCTCTGCC ATGCTTCCTT GGATCCCTAT CTACCCCGTT TTGGGTGACA 000240 000241 GGACGAGTTG GGCCAGTTAC CAGAGTACAG GACATTTACT TTGTGGACTG CCATTCAATT TGACAACAGA TTTGTTTTTA 000320 000321 ATGTGCACTT TCTGGAAACA AGATATTGTT CCTCAAAGAA ATGAAAAAAA TGTTGGGAAT ACATAAGACA TCATAACAGA 000400 000401 CACCAGCCTG AGTCGAAGCT GTTAAAGAGG CCAAGAATTC CCAAGCTTTC CCAGGCAAAC GGGGAAGAAC ACTGGGATGC 000480 000481 CTTTTCCTCC TCCTCTGTCC ATCTGCAGGC CAAGTGTGCA TCAGTCACAG GCAAACTCTG AATTGAGCTT TGTGCAAGTC 000560 000561 TCTGGAAAGA GACCCAAGAT CGTGTGATGA GCAAAAGTGA CAGTGCTGGA GGCAGCGACA TCTGCAGAGC CAGCCCCATC 000640 000641 CCTATCTGCA GCAGAATATG TATGGGGATC CTTTATGTGA ACAATCCACC CAGGGTAGAA TGGGGCTTTT GACATCAGCT 000720 000721 GAGACCCAGG CGGCCTTACA ATGAGAGGGC TGTTGGTCAA AGGAAGGACT GTTTAATGAA CTGAGAATCT GAGGCCAGCT 000800 000801 CTGGCCATCT GCACTTGGAA TCATTAGAGC AACTCTACTG TAACTGGCAA CCTTGAATAA TGCAGCAAAT TCATATTCCA 000880 000881 AAATTGTGAA CTTTAAAATT TTGTGTTTGT GTCTATGATG AAAAGCATTA TATAAACATT TGATACTACA ATTTTATTAG 000960 000961 TAAGGAAGGC TGAAAAAGTA TCTCTCTTTT GACTCTGAGG TCAATAATGA TAATGGCTTT TCCCCTACAC TGGGATAGAA 001040 001041 ATGTTCTGTC AAGGATATGA AAACACTTTA TGAAAATGAA ATTCATTAAA GCCCTTAATA ATCAGGTAGG GAAGGCAGGT 001120 001121 GCTCACAATT GTCACCTGTT GGTGAGTGAA CACCTTAGGC TCGGGGAGGA CAATGACTCA AGAACAAGGT CGAATTGCAG 001200 001201 GTGGGGGGTG AAGCTGATCC CTAACAGTGT CCTCCAGCCC CTGGCACTGA GGAAGGACAT GGAGGGCTTG CATCGACTTT 001280 001281 TCCTGGCAGG CTTGTGATTC CCAGCCAGAA TGCAGGTGGC AATGTTGTGA TTCCTGGCGT AACCTTCAAT GCTTCAATGA 001360 001361 TAATCTCTGC TGGTGCCAGG CACCAGCTGA GTGTCACTGT GCAGCTCCCA GGCTTAAGTG ATGCATGCCG AGGTTTTCAG 001440 001441 AGCAGTCTCT CATTTATTAG TTGTGTTGGA AAGAAATCTG TACTACCTAA CTGGGTACCT CTGGATTTTA ACAGCTGTGG 001520 001521 TTTATAAGAG ATATGAGAGG GGGTTTGTTT TCAAAGTGCC TTTCACAAAG TAACACCTTA GACTGTAGTT TACATTCCAT 001600 001601 TCCAGTAGGA TAACTTGCAA CACTTCTGTG CTCAGAAATC CAACTGTGCA AGAAAAGTCA GGTTATATTT TCATACAGCC 001680 001681 CGTTCTGGCA AATATGCCTT CACACCACTT TCCCTCCTCC TCACCGCTAT TGGCAATAGT CCCAATGGAA GAGTTTTATG 001760 001761 TCAAATGCTG AGTATCTTGG AAGCTGTCCT GCACAGACAC GACTGCTTGG CTGCGTGTTG GAGAGTCGCG GTTGGACTGG 001840 001841 GAGACCAGGA AGGTCCCTTC TGGTCTGAGA TGTGATGACT CTAGAACTAA TTAGTTTCAA CTCATAACAC GAAATGATAC 001920 001921 TAGCTACCAT TTGGTGGGCT TTTTCTGTGT TCCAGGCTCT GTGCTAAGAT CTTAGCATTA CTCTAATTAC AAAATCCCTG 002000 002001 CCAATATTAT CCTCAGTTTA CGCAAGAACA AATGGGTTTA GGGAAATCAA AAACTTGTCC AATGACACAG ATTTAAGATT 002080 002081 TAGCAACTGA TGGCCACGTG GAAATGGATT ACAGATTATT CTAATTGGAC ACTCTAAACG TGCAATTTAA CCAGAATGAA 002160 002161 ATTTAGGGCT GCGTGCTGTG GCTCATGCCT GTAATCCTAG CACTTTGGGA AGCCAGGTGT ATCCCTTAAG CCCAGGAGTT 002240 002241 TGAGAGCAAC TTGGGCAACA TGGTGAAACC TGTATCTACA AAAAATACAA AAATTAGCCA GGTGAGGTGG TGTATGCCTG 002320 002321 TAGTTCCAGC TACTTGGGAG GCTGAGAGAT GGGAGGATTG GTTGAGCCTA GGAGGTCGAG GCTGCTGTGA GCTGTGATGG 002400 002401 TTCCACTGCA CTCCAGCCTG GGCGACAGAG ACAGACTCCA TCTC |
Predicted Small Protein
Name | NONHSAT126822_smProtein_200:385 |
Length | 62 |
Molecular weight | 7029.0611 |
Aromaticity | 0.131147540984 |
Instability index | 42.8262295082 |
Isoelectric point | 6.50518798828 |
Runs | 10 |
Runs residual | 0.0111173921236 |
Runs probability | 0.0361331920156 |
Amino acid sequence | MLPWIPIYPVLGDRTSWASYQSTGHLLCGLPFNLTTDLFLMCTFWKQDIVPQRNEKNVGN T |
Secondary structure | LLLLLLEELLLLLLLLEEEELLLLLEELLLLLLLLLLHHHHEEEELLLLLLLLLLLLLLL L |
PRMN | - |
PiMo | - |