NONHSAT126931
Revision as of 07:00, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT126931 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1762 nt |
Genomic location |
chr8-:64297397..64330488 |
Exon number |
4 |
Exons |
64297397..64298464,64323466..64323527,64325669..64325809,64329998..64330488 |
Genome context |
|
Sequence |
000001 GCATGACACC AAGCAGCAAG TGTAATTGAA GGGAAATGCT CTATCCAGAT ACCAAGAGGA CTAGTCACGA GACCAGGCCT 000080
000081 CAAAACAGGA AAATGGTTCC AATGGAGAAG TAGAGTATGA GTCAAGAATT GAGAGATGAG CAATATACAT TAGCATTATA 000160 000161 AAACACTAAA GAAAGTATAC ATGCCTAGAG CCTCTGAGGC ACACTACAAA GAAGATGACC TGAAAAGTGA CTGCTTACAG 000240 000241 GGTCCACATA TAGGTGACAT GAAAGTTCCC TCAGCCTTGT CAGTATGAAT GAGCCTGTAA AGTGAAGATG AATGAGAAAG 000320 000321 GGATTAGATG AGTCATCTGA GTCTGTAAGG CCCTTGCAAC AAGAGCATGA AGATGATAAA AGAGGACAGA AAGGGAACAA 000400 000401 GTTGGGTGAA AAGAAAACAA TGAATTAGGG TGAAAAGATC AAGCCAGTGA CCAAACTCTC TACAACTAGA AAAGACTTAT 000480 000481 CAGTTTCTCA TGTAGTGGCT ATATGCATAC TGGCTTTGTA ATCGTTGCTT AAGCCGTATT TGTGCTGTGC ATTTTTTATT 000560 000561 AACTCCTATG CATCGCCAGG ACCCTGAAGG TGTCATACTC TTCCTGACAG GACCTACCAG CTTGACGGAG AGCTCTATCC 000640 000641 CCATTTCCTA AAGAAGAAAC CTGATCCTTG GAAATGTTCA GTGGCTGCCC CAAGATGTCG GCACAACCTC TTGTGCTCTT 000720 000721 GCCTCCTGCC ACAAGAACAT ATGTCCCAGA AAAGGGCCAC TCCATCAGCC TAGGTCCAGA AATGAGAGGA CACATGGACT 000800 000801 GAACTTGAAG ATGGCCCACA GCAGACCTGC AGTCAACTCT CAGCCTTTAT GTAATGCGGG AAAGAAGGAA ATGTGAATAT 000880 000881 TATAGACTAC TAAAATTCTA AAGTTGTAAC ATAGCAAAAT GATCGATACA ATTAGCAGTG GCTATCAGTC TAGCATATTG 000960 000961 TCATGCTATA TGCATGCTAT AAAACTATTG AACAAAAATA TCACTATCCT ATCATGGACA CATTGGACTT TTCTTTTCTC 001040 001041 CTTATGACTG CATCACGTGT GATGATCAGA AATGGAGTGA AGACAGAAAA ATAAGAAAAT TCAAGAATGT GCTACAGAGT 001120 001121 GATCCTCTCC CTCTTAGAGC ACCCACAGAA ACCACTCATG GCTTCTCTGT CTGCATCCTC TCCACACAAA CATATTCTTT 001200 001201 AAGGTACCAG CCCCATATCA CATACCTGTA TGTCAGCCCA TAATAGGCCT TACCTTAGAA GCCAAAGATC CATAACTACA 001280 001281 CAGTATTCAT GTTGTATAAT GTGGAGCAGC ACCAAAAAAT AAAGTGGCAG ACAATAATGC CTATGACTAA AGTGACCCCT 001360 001361 TGATCCCCTC CCAAAGCAGT CTCCATATCA TAACTGTCAA TTGTAAAAAT AGTATGTATT TTATATATTC TCCCTAATAG 001440 001441 GTAACTCTGT ATTTTAAAAT CTTAGGCTCC AAGTTTTAAT CTACTTCGTC CCATCGGAGT ACTTTTTTTC AATTTTCTCA 001520 001521 TTTACAAGGC CATTTTTATT TTTGCCTCAC TCTGTGCTGA TGGCCCCAGA TCTACTCAGT CAGTTTCTTC TCTTCTATGA 001600 001601 TGTCTATATT CAGACACCTA GGAGATTGAC AACTCCTAGA AATACCACTC ACTCAACTGC TCCTTTCGCC TTCTTTCGTA 001680 001681 CTTGGGCATA AACTTTACTG TATCTTAAAC ACATCTTCCT AAATGCCTCA CGACTATGAT AAACTTGACA TGCTTACAAC 001760 001761 TG |
Predicted Small Protein
Name | NONHSAT126931_smProtein_1559:1690 |
Length | 44 |
Molecular weight | 5092.7854 |
Aromaticity | 0.186046511628 |
Instability index | 42.1002325581 |
Isoelectric point | 9.96893310547 |
Runs | 7 |
Runs residual | 0.0054873268879 |
Runs probability | 0.0207181971888 |
Amino acid sequence | MAPDLLSQFLLFYDVYIQTPRRLTTPRNTTHSTAPFAFFRTWA |
Secondary structure | LLHHHHHHHHHHHEEEELLLLLLLLLLLLLLLLLLHHHEEELL |
PRMN | - |
PiMo | - |