NONHSAT127191
Revision as of 07:01, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127191 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1834 nt |
Genomic location |
chr8+:72665590..72668941 |
Exon number |
2 |
Exons |
72665590..72666150,72667669..72668941 |
Genome context |
|
Sequence |
000001 gtcccaactc ttcaggaact cactgttcat tggcaaaaga agcaagtgaa tagagaaGAT ATCATAGTTT CTATGATATG 000080
000081 AGCTTGTTCC GATATAACAA AGCCATGGAG GAGGAATTCC AGCAAAAGCT TTATAAAAGT TTGTGCCATG AACTGACAGT 000160 000161 GAGGTCATTA AAATGGAGTT TGCAATTTAA CTCACTAGTT TTTGGCAAAT AAAATATCCT TCATACTTTA TTAACTAATA 000240 000241 ATATCATCCC AAATTGCCTT TTATTATGAA TAATAACTTT GAATTGTTTT CTATTAACAG GACATCTGTG CCCTAAGTGG 000320 000321 AATGGTAGAG ACCATTAAAA AATTGTCTTG AAAACATACA GCTGATATTT TAGCACCGTG CATTGTAAGT ACGGGTCAAT 000400 000401 CTTGGGGTCA ACAGGAATTT ATTTTTAGAA TGTAAAAATC ACCCTTATTA TAAAGGGGTC TTAGAAAACA TCCAGCCCTA 000480 000481 GGGCCTGTAG CATGGCTCCC AAGGATACGA TTGAAATAAG ATTCTGGTTT AGTCGTTTTA AGAAACAATA TTTTATTCAG 000560 000561 GGAAACTTGA TGGTCATGTT CTTTATTTTT ATTTTTTTCA TAAAAATGCC AGCTGGACAT GTTCACTGAA GCTCTGGGTA 000640 000641 AAGAAGTTGG AAGGAAAGCC ATGAATTGAG AGAAAGTGGG AGCTACAGTG AAGAGAGAGA GCATGACCTA AGTAGGAAGG 000720 000721 GAAGGGAGAG AGGAAAAAGA AAGAAACCAC GGAAGGATGG AAAGGGAGAA ACCTCATCTG GGCCAATTGG GGTCTGGCTT 000800 000801 CTTCAGGGGA GCTACTTAAC CATAGAGCAC GTGACGAAAA ACGATTGAAA GATCAGGTTC AATCACATGG GCTGAAGTCC 000880 000881 ATCTCACCTC CAGTTCTGTC TTGCTCTGCT TTTGAGGATT GTTAATGGTC AGCCTGATGA AGGGCAGCGG GTAGAACCAG 000960 000961 AGCGCTGAAT GCTTCTGAGC TGCATGCTGG CTCCTGAGCA TTGACAACAT TCTCCTGCCC ATGCAGCATC AGCCCCAGAA 001040 001041 AGAGCTGAGA GAGCTGCCCT GAGGATTCAT TCTGTGTGTG TTGGAGGAGT GGGGGTGGGG GTGGAGGTGA TTACAGGGAA 001120 001121 CAACAGAGAA AAAGAGAAGT ATAGTTTATA ATTTCCCCTT ACATTGAATG GCTTTGTAGC TGCTGAATTG TGCTACCTGT 001200 001201 TTTCATACTG AGATTTATCT AAATGTATTT TAATGGCATA GGTACTAGTA AAAAATTTTA GTCAAATAAT GTGTCTACAT 001280 001281 AAAAAGTCTG TAAAAAGCCT TGCCTTGCAA AATAAACTGT TAATTGCATT TAAAGATAAT AAGGGTTAAA AAAATAAGGG 001360 001361 GCATGTTTAC AGGGATAAAT GTTCATTGTG AACAAGAAAA TGTGGTTTCA ACTAAAGTAA GGTAATTAAC AACAACACAA 001440 001441 AAACGCCAAA GGATTTGGAG AACCGAAACA AAAACAAAAC GCCTCAGAAG GGTGATGCAC CTTCCGACTC TCCCTTCCTC 001520 001521 GTGCTCAGCC CCCACGTCAA TCACCTCCTC TCAGCGGTCA CTAACCTGGC TATTTGTCTG TTTCCACACT ACTGCATCAC 001600 001601 AAAACATCAT GCCCACTTGC CTGGAAAAGA TAATATCTCA CACATATGGG GCCTGCCTTT GATCTCTGTG GTCGAGCTGG 001680 001681 AGGTCAGAGG CCTGCCTTCT TCAGGCCCTT ACTTCAAATG ATTCCTTTCA TTTACTGAGA AACCAAACGT TAGAAGGGCA 001760 001761 AAGGCAGAAA AAATAAAGCC GTGATTTAAT AGCAATTTAT GTGTTTGGCC TATTTCGGGT TGGGTTTTAT TCTC |
Predicted Small Protein
Name | NONHSAT127191_smProtein_491:628 |
Length | 46 |
Molecular weight | 5559.6834 |
Aromaticity | 0.244444444444 |
Instability index | 49.5377777778 |
Isoelectric point | 10.1659545898 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0539909657557 |
Amino acid sequence | MAPKDTIEIRFWFSRFKKQYFIQGNLMVMFFIFIFFIKMPAGHVH |
Secondary structure | LLLLLLEEEHHHHHHHHHHHHHHLLHHHHHHHHHHHEELLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooo |