NONHSAT127684
Revision as of 07:03, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127684 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1432 nt |
Genomic location |
chr8-:92968730..92970161 |
Exon number |
1 |
Exons |
92968730..92970161 |
Genome context |
|
Sequence |
000001 TGTTATTTTT TTTAAATGAC TTTTTAGTTT AGAAAGTTCT GATGAGCAAA TAAATACATC TATCTACATG TTGGAAGTCC 000080
000081 ATCTGCCAGC ACACCTGCTT AAAGTGAAAT GAAAGCACAT AACCAGGCTC TGAATGGGTT ATATTTTATC ATGGTGCTCC 000160 000161 CAGAATCCTT TGACCTCACT CTGCTTTCTA GTCTGCTTGT GACACTGGAC AGTCCTTTCT TACAGAGCTA TTATATGTTC 000240 000241 TAGGCTACGA AGGGTTAAAT AATCCCAAAA ATGAGGTATG TCATACCCAC ACGTCTTTAT CTCTAGAAGC TGTGATGTAT 000320 000321 GTGAAACAGC ACTGTTATTC TTAACACTAG TGTGTAAAAT AAGGATTAGT ACAGTACGTC TCATTACTTT TTAATTCAGG 000400 000401 GCACCCTGAG TGAAAACAAA TACAAAAAAA AATCCCTAAC TCTGAGCTCT ATCTCTGATT CCTCTTCCTC CTTCCCCTCT 000480 000481 TCCTCCTCTT CCTCTCCTCC TGTTTTGCTA CATTCTCCTC AGTGGCAAAA AGTTTCACTC TACCTCTGAC AGCATGTATA 000560 000561 TTGCACCAGT AGCTAACAAA AACTGGTCTA GTCAAACCAA ATGGGCACAA AAGAACCAGG ATACCAAAAG TTAAGCTCAT 000640 000641 ACAGCTGCAA ACCATATCAC TTCTTGGTAA CAATGCAGAC CTCATAAACC TAAAGAAGAG AAAGAAAAGA AAACTTTTGT 000720 000721 TACTTTCCTT TTTTGCTTGT CACTTATATA CAGGCTATGT GAGAATATAA TTTGTAGGTA TAACACATTA AGAAAAAGTT 000800 000801 ATCTTCATTG GATAGAATTG AATGGTGGTC GCTGATAGGA ATAGGGCGTC CTCTAGCTCT TATCTCTGTC TCTTACTCTT 000880 000881 TTCTCTTTCT CTTTTTCTCT GTCATGAGAC TGTGTGTGAC AGGGCCACCT GTCTTTTTTT TTTCTTAAAT TTTTTTTTTT 000960 000961 TTTATGTGTA GGTGCATGTC TTGGGGATTT AAAAATTTCA AGGCTGGTTT ACTTATGCAA AGCATGCCTA CGTCTGGAAT 001040 001041 ACTTAGGGAA AGAAAGCGAC TCCATGTTGT CCGAATTCCT CAAGGGACAG AAAAAAAATT GGAGACTGTT GAAATGCAGA 001120 001121 TTTGAAGTAA TTTTTTTAAA ATATTATTTT GGGTTCTGCG ACATTGTGAA AAATTAAAGT TGTTGTGCAA TACTTAATTC 001200 001201 AGACATGTAC CACAAGTTAA TGGTAGACTA ACACTGGGGG GTGGGGTCTA GGCATCATGC TTTTGTCAGC ATACTCTTGA 001280 001281 GCTTTTAAGT CTACTATGTC TGAACTGTGG TTTCTTGTTT ATCCTTTTTT CCTTAGTTGG ACTGTAATGT ATGGTCTGTC 001360 001361 AACCTGTGAA TCTTTAAAGT ATGATTCAGG TATTGTTGTA TTCTTTACTG TGTAATAAAA AAGTTGAAAA AA |
Predicted Small Protein
Name | NONHSAT127684_smProtein_821:970 |
Length | 50 |
Molecular weight | 5758.7316 |
Aromaticity | 0.224489795918 |
Instability index | 41.3267346939 |
Isoelectric point | 6.49493408203 |
Runs | 5 |
Runs residual | 0.0600110314396 |
Runs probability | 0.0347641759406 |
Amino acid sequence | MVVADRNRASSSSYLCLLLFSLSLFLCHETVCDRATCLFFFLNFFFFYV |
Secondary structure | LEEELLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTi |