NONHSAT127777
Revision as of 07:04, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127777 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1148 nt |
Genomic location |
chr8+:95565982..95581270 |
Exon number |
2 |
Exons |
95565982..95566135,95580277..95581270 |
Genome context |
|
Sequence |
000001 GCGAAGTGCG GAGACGGGGT TTTGGAGACG GTGGATGGAG GAGGGGGAGG GAAAGCTGCC AACTTTGGAT ACCAACCCCG 000080
000081 TACACCCACC GAAGGGGATG TCCCACTTTT TCCAGCGCTG GGAGCAAAAA GATAACAGTG AGCGAGGTTG AAAAATTATA 000160 000161 AAGTATCCCA GGACAGTGCT CTGTAACCAG CCCATAGTAG CTACTGCTAT TTTACCAGCT ACTGTATCTT TCCTTCTTTG 000240 000241 ATTTCCAGCA CCTGACAGTG AAAAGAGCAA TTTGAAGAAA AACAAAATTT ATCTTCAATG TGAAAAGCAA TTTATAAAAA 000320 000321 TCCGAATACT TGCCAGGAGC AACTTGACAA AAAAGACAAA GGTGGTAGAA GAAATGTAAC CAGCCCACAA TTCCAATGTT 000400 000401 GATAACAGAT GAGCTCCCTT TCAAGGTGAC TGACATTTAC ACAAGTACAC AGAGCAAGAA GAAGGTCTGA GTGAACTGCC 000480 000481 AAGCATTTTA ACTTCTCCTG AGACCAAGTA CATCAACAGT TCTCTTGGAA AAGAACAACT GATTTGGGAG TCTAGCAGAC 000560 000561 TGCCAGCTGC AAGACATTCA TCCAGCATCA GGAACACAAT GGGCCTTCAT TTGCCTGCCT TTCTGAGGGC ACCAATCAAA 000640 000641 AGTAACAGCT GCCACCTTTT TCTATGAGAC TTGATTATAA TTTTCTATGG CCAAGGGTTT GCTGTGACAC TTCCACATCA 000720 000721 TTCTTCAGTA TGTAGTCCAG AGATTAGCTA CAGATTCAAG AAACACAGAC TGTAAACTAT TATATACAGA CATATCTCAA 000800 000801 AATAAGCATA CCCATTAGTG CCAGCTGCCC TGAAAGACTG AATGACCCCA GCTATTTTCC AAATGTTTTT TCAGAAAGCC 000880 000881 ATGAACACAC CTTTCTGGGA TCCTATCTAT TTCAAAGACA GGCAAAGCTC TGTGGTTCAG TTCCACCACC CAGTACCAAG 000960 000961 CCCACAGTAT GCAGACCATA CGCCTTACAC ATGGCCTTTT CTCTTTATGT AATTGCTGTA CCATATTCAG CAGATCTAGA 001040 001041 CTGACTCAAA GCATGTtccc tcaagaagct ccacagaaaa aaaggtttct gtgatcaaaa atcatttggg aaatgctgca 001120 001121 aaccctatct gcctcttaga gcttaacc |
Predicted Small Protein
Name | NONHSAT127777_smProtein_968:1093 |
Length | 42 |
Molecular weight | 4819.6789 |
Aromaticity | 0.0975609756098 |
Instability index | 73.0658536585 |
Isoelectric point | 10.133605957 |
Runs | 7 |
Runs residual | 0.00523716893611 |
Runs probability | 0.0143967496909 |
Amino acid sequence | MQTIRLTHGLFSLCNCCTIFSRSRLTQSMFPQEAPQKKRFL |
Secondary structure | LLEEELLLLLLLLLLLLLEEELLLLLLLLLLLLLLHHHLLL |
PRMN | - |
PiMo | - |