NONHSAT127815
Revision as of 07:04, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127815 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1057 nt |
Genomic location |
chr8+:95993136..96001576 |
Exon number |
2 |
Exons |
95993136..95993201,96000586..96001576 |
Genome context |
|
Sequence |
000001 gaggaacggc acatgaccca ggcctatgcc aatcagcatt tcacattcct catggttggt tcaaagCTCC CACAGGCCCA 000080
000081 TTCTGGTGAC TCATGACTTG TATACACAGA ACAACAGAGA AAAGAAAAAT AGAATTAGAT AAACAAGCAG GGGCAACAGT 000160 000161 GAGGGCTATG TCTTACAAAG AACCATTTTT AATTGAATTC ATTTTCTCTC TTGAAATTCT TTTTTTTTTC CCTCAAAAGT 000240 000241 GGGAAAAAAT TCTCAAATAA CAACAGCAAA CCAAGAAAGC AGCTTAGTCT GCACTGCATT TGCATTTCTT AGTTTCATTC 000320 000321 CCTATTCAAA AATGTCTTAG GCAAATGTGT GGGAATGAAC ATGCACTTTA AAATTATGGG ACCTAGTAga tttaatggaa 000400 000401 tgagccctgg attgggagcc aggggacctg gctttgaatg gtcccaaccc aggcacttat tTACCTTAGT TTCTTCACTT 000480 000481 ATAAAATTAA ACACAccatc tactgatgaa tggataaaca aaatgtgata tatccacaga agggaatctt gttcagctgt 000560 000561 gagaaggaat gaagtatgga catgtgctat aatgtggatg tgcgttaaag acattatgct aagtgaaaga agccagacac 000640 000641 aaagaccata catttcacga ttccacttac atgaaatgta cagaatagct aaatctaagg acataaagta ggttagctaa 000720 000721 tgggtacagg tttcattctg ggttgatgaa atgttccaaa attgattgtg ctgatggttg tatttaaaac tctgcatata 000800 000801 ctgaaaacca tttaattgta cattttaaat gagtgaattg tatgctatgt gaattatatc tcaataaagt tgttcaaaaa 000880 000881 AAAGAGAAAA AAATGAAACA GTGATTTCCA CCCAGCCCAG ATATGTTGTG AAGCTCAAAT GAATTGTTTT TACAAATAAG 000960 000961 AAAACCACTT AAAACTATAC AATGAAAATT ATTTTTAAAC TTAATTATTT CTTAAATTCG AGGCTGATAT ACTAAAGGAA 001040 001041 TTTTTCCAGT GACAGTT |
Predicted Small Protein
Name | NONHSAT127815_smProtein_92:259 |
Length | 56 |
Molecular weight | 6651.8586 |
Aromaticity | 0.145454545455 |
Instability index | 66.0272727273 |
Isoelectric point | 9.30084228516 |
Runs | 11 |
Runs residual | 0.0484848484848 |
Runs probability | 0.031162178221 |
Amino acid sequence | MTCIHRTTEKRKIELDKQAGATVRAMSYKEPFLIEFIFSLEILFFFPQKWEKILK |
Secondary structure | LEEELLLLHHHHHHHHHHLLLEEELLLLLLLHHHHHHHHHHHHHHLHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiii |