NONHSAT127952
Revision as of 07:04, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127952 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2205 nt |
Genomic location |
chr8-:100358280..100360484 |
Exon number |
1 |
Exons |
100358280..100360484 |
Genome context |
|
Sequence |
000001 AGAAATATCA TGTGGCATCA GTCCTGTGCC AAAAGGCCAA GGTGACCATG AGCTAACTGG AGTCAACAAG TATATCCACT 000080
000081 ATGACCTCCT AGAAAAGAAA ATTAACAGTG TTAACGAATG ATTGAACCAG GCTCTGATCC TCTTGGAGAT CATGTATGGA 000160 000161 TACCTAGATG ACCCCAGGCA ACTGAACAGA GTAAGATGTA CCTGCATAGG CATTCAGGAT ACTATGGACC GTATGGCCAC 000240 000241 AGTGCAGTTC ATAAGCAGAG AGGTGGCCAA ATGGCCATAT CATCCACCAT CCACTGTGAT CACCAGACAA GGCTCAGCTC 000320 000321 AGGGAAAAGA AAGGTCTGTG CCAGGCCAAG GACATAAATC AGAAAGTATA ATTTCCTAGC AACTGCAGAT GTGAACTACA 000400 000401 GTGTGGGCTT TTAGAAGATG GACCTAGAAT CAATCACCAG ATCATTCTTG AAAGCTACAT ATACCCCAGG ATTCTTCTTA 000480 000481 TTCCACTACT CCCACACCTC AATAGTGGTG GCTTGCAGAG CATATACACT GGAGCTGGGG AGGCTGATGC AGTGGACGGC 000560 000561 AGGATTGAAA TTATTTAGGA GTTGAAGTGC CACAAGATGA ATGGTGTGAA GCTGACAGGC ACAATCTCAA GCTAGATCTG 000640 000641 ATCCACAGAT GTGATCCTGA AGGTGGCACA CGCGTACTGT GGAGTACCAG CAGCCTAGCA TACAGCCCAT CTCATACATT 000720 000721 GGCCTGATGA TAATCTGAAC ACGGGTGTAG AAATTGGGGC CCTCAGTGTT CTCTTAGAAC CACGGAATAA AGCAATAACT 000800 000801 GGGTAAGACA GGCTAAGGAG ACAATGCCAA TCCAAGATAA AATCAAGGAT CACTTGGTAC CTGACCCTGA TTGCCATTAT 000880 000881 AAATGACAGG TAAAAATTAA CCTCAACAAG CTGAAGCCCC ATGTAAATAA GCCCTTTACC CCGACCTAGC CCACACTGTG 000960 000961 GAAGAAGTAG GTACTGTGGT GGAGAAGGAG GGATGGCCTT TGGACATCAA AGTGGGTCTG ATCAACAGCT GTACCAACTC 001040 001041 AAGCTATGAG GACATCAGGT GCTCAACAGC TATGGCCAAG CAAGTGCTAG CTCATGGGCT CAAGTGCAAG TCACAGCTCA 001120 001121 CCACAGCACT GGGATCTAAG CAGATCTACA CTAATATTGA GCATAAGAGT TATTCACAGA TCCCATAGGA TATGGCAGGC 001200 001201 ATTGTCCTGG CCACTGTCTG TGGCCCCTGC ATTGGCCAGT GGAACAGGTA GGACATAATA AAGATGGAGA AAAATGCAAT 001280 001281 CTTCACCTCC TACAAGAGGA ACTTGACAGG CCACAATAAA GCAAACCTGA GGCCCAAGCC TTCATCATGT CCCTAGAGAT 001360 001361 CCTCAAGCCC TGGCCATTTC TGTCACCATC AACTTCAACC AAGAGATTTA CTTCCTGACA ACCATGTATG GGAAGAAGTA 001440 001441 CAAATTGGAG GCTCCAGATG CAGATGAGCT TCCCTAAGCA GAGTTGACTC CAGGAAGGAC AACTACCAGC ACCCCTACCA 001520 001521 CAAGGATATC AGTAGGCAGA GGGTGGATAT GAGCACACCC AACAAGTGCC TACAGCTCCT GGAGCCTTTT GACAAGTGGG 001600 001601 AAGGCAAAGA CCTGGATGAC CTACAGATTC ACATATCCTT ACAAAAGTGA AAAGGAAGCA TACCACTCAC TACATTTTGA 001680 001681 ATATTGGCAT ATGGTTCAAG TTATTGAGGC ACCAGTACAA CATCTCCAAT AACCTGCTTA TTGGTGCCAT AAACACTGAA 001760 001761 AACAATAAAT GCCAACTCCT TAGGTAATGT TGTCACCAGG AGAAGGCCCA CTACTGTAAG AAACATGCCA TCAGATAGAT 001840 001841 GGTTATCAGA GATGAGAGCC ATGGCAAGCT GGGAGCATAT ACCACTAGAA CCCTGCCACC TTGGGAGACA GGGCATCATC 001920 001921 ATCAAGAGCT TTACCAGGAT CCAGGAAACT AGCTTCAAGA AACCAACCTG CTGTCCCTTA CCTTTACTGA CATGACAAAC 002000 002001 TATAAGATCT ACCCTGCGTG TAATCTCATC ATCCAAGGCT GGAAAGGCTT TGCCCTGTCA AGCCCCTCAA ATGTATCATC 002080 002081 AAGAACTCCA AGAGGATTCA GGAAACCATC CTCCTGAACC ACGAACTTCT ACAAGACCCT GATTCAATGG TTCCATGTTG 002160 002161 GCAGTGCTCT GAACAGAATG ATGGAGCTAT AGTACTGAGC TCTAA |
Predicted Small Protein
Name | NONHSAT127952_smProtein_1991:2116 |
Length | 42 |
Molecular weight | 4561.2075 |
Aromaticity | 0.121951219512 |
Instability index | 55.8341463415 |
Isoelectric point | 10.5607299805 |
Runs | 8 |
Runs residual | 0.0191530749663 |
Runs probability | 0.00701068715773 |
Amino acid sequence | MTNYKIYPACNLIIQGWKGFALSSPSNVSSRTPRGFRKPSS |
Secondary structure | LLLLEELLHHHHEEELLLEEEELLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |