NONHSAT128274
Revision as of 07:06, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128274 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2734 nt |
Genomic location |
chr8+:109486080..109499145 |
Exon number |
4 |
Exons |
109486080..109488192,109489011..109489121,109491235..109491339,109498741..109499145 |
Genome context |
|
Sequence |
000001 CAAATTATTT TTACTTCTCT ATTCTTAGTC TTGTTGAGTc actgtgtgta atgaattaac ttctctatgc acctagaata 000080
000081 gtactggcta tgtattatcc ctgacaagac tgaggaaata gtcactTTCT GCGTGGCCTA ACAATGGCCT AGAAAAgctg 000160 000161 gactagacca tctgttgagc tccttctagc tctaatttta tttaattcta tATTTTATCC ACAAAATTAG TTTGATACTG 000240 000241 TACTTTATAA AATTGGGGGA AGGAGTCCTT TTCTCATATG TGATGCTAAT TGATTTTTGA GAAAATATCT TGGTATTCAT 000320 000321 TTTACCCTAA GAGCTGCTAC TACCTGCCCA TTTTATCTTG CTTTATGCAC CAGTGTCACA GTTGTGCTCA ACCCATTTAA 000400 000401 ATGTCTAAGA ACTTTTATTC TTAGTCTCAA TATGAATTTT TGGCATCATA CTATTAATAA TTAAAGGAAC ACATTTAGAA 000480 000481 GAGAACTGTC TTTTGATAAA GTGTTTAAGG TAGAGACAAA TTTTCCCTTT TCTTTTCGAG TGATAAATAT ATATTAGGTA 000560 000561 GGTAGTCATA ACACATTTGT TTTAGACATT TATTCAATCA TTTGTTCAGT CTTATTAAAT ACCTATCATG TGTCAAGAAC 000640 000641 CAATGCTAGG TTTTGAATTT AAAAATGGAA AGGGCTAAAT AGCTGCATGA TCTTGGATGA GAGTacacac acacacacac 000720 000721 acacacatac aTATATATAT GTGGTCCTTC ATAAATCTAA AATGCTGTAA TTATTAGGTA ATCTGCAGGG TGTATTTTTT 000800 000801 TTCCTCAGTC CCTTTGGGTG TGACTGCTGT ACACATTTTC ATGTTACCAT TGACATCTTC AGTTTTTCAA TGTGATGTGT 000880 000881 AATGCATATA AGCAGCATAT GTAGTGGTTG AAGAGTACAG GCTGTCTGGA GTGGCACAGc ctgggattca gtttacatct 000960 000961 ctgtgcctca gtattctcag ctctagcatg ttgataataa tttccttctt cctagggttt tggtaggatt aaatgagtta 001040 001041 atacatgtaa cacatttaga acaatgcatg acacgtaata agcatttagt aaaagctatt attAGTATAC ATGTGTGAAA 001120 001121 CAGGAAAATA ATTTTTAAAA GTATATCAGG CAGTAGTGTA AAGGTAGATC CCTTTGTATA CTGGTAAATG CCAAAAATAA 001200 001201 CTTTAGGTAG CCTCTTTTTG TTGGGTAGTG TCATCACTTC CTCACTGGGA AGAAATCTTG TAACACCTGT GTTCATTAGA 001280 001281 ATTTCCTGTA GATAGTGAGG ATAGTCACAT GGCATTAAAC GTTTAAAATA TATTTAGTGA ATTACAGTCA CATGCTTTAA 001360 001361 AATGTTTTTC CAGAGCTCTT TCTGGCAGTT CTCTTTCCTT AGGTTTTCAG CAAGATTTTT GTTTATTCTA CCACAAGATT 001440 001441 AAATAATAGT ACAGTATATA TCAAAACCAA CTTGATCTGT TTTTCATGGG CTTAGAAATT TATAACTTCA TTATAATTTG 001520 001521 GTATTTGACA GTGAACTTAA GTAATGAGAG AAATCTTTGT AATAGAATAT GTTGGTAAAT ATATGCCTGT GAAGAATTTT 001600 001601 TAGTGAGTAG AGAATATTTA ATAAAATGTT TATTTTCTCC TTACACATTA GCTGTTTGAA TATTTTTTTA AATGATCAGT 001680 001681 CAACTTCCAG AAGTTGTTTT ATATACAGCT TGATCCAAGG TCTTGAAGCC CTTCTTATTA GTAGTGATGG GATGTAGTAG 001760 001761 GAGTGACCCA GTTTTTGAAA TGTAGTATCT ATTGATTGTT TGCAGGCTGC TTTAAGATTT AAGCCTGTGT TTATTAATTT 001840 001841 CATGATAAAA TTTAATGTCA TTGATATTTA TGAATTTCAG ATGACAAATA CTTTATTAAT AAAGCTATGT AAATTATATT 001920 001921 GGGAATAAAT TGTTTAACAT GACTAAAGTT GTTTTTAAAT TATTTCAAGG TTTAACTAAG ATAAAAATTT GTGACTTTAA 002000 002001 AAATTAATTT CTCCTCTTGA TGTGTTTTTA GCTATGCAAA AGCAGCCTTT TGTTTAGAGG AACTAATGAT GACTAATCCA 002080 002081 CACAACCACT TATACTGTCA GCAGTATGCT GAAGTTAAGT ATACCCAAGG TGGACTTGAA AACCTCGAAC TTTCAAGAAA 002160 002161 GTATTTTGCA CAGGCATTGA AACTGAACAA CAGAAATATG AGAGCTTTGT TTGGACTTTA TATGTCGGCA AGTCATATTG 002240 002241 CTTCTAATCC AAAAGCAAGT GCAAAAACGA AAAAGGACAA CATGAAATAT GCTAGTTGGG CAGCTAGTCA AATAAACAGA 002320 002321 GCTTATCAGT TTGCAGGTCG AAGTAAGAAG GAAACCAAAT ATTCTCTTAA GGCTGTCGAA GACATGTTGG AAACATTGCA 002400 002401 GATCACCCAG TCTTAAGGTT TCAAAAACTC TTTGACATTA GATTTCACAA CTGCACAATT GAACTTATTG GCCTGTAACT 002480 002481 TATTTACTAA ATGCTCAGTG CTATTTATAT ACTACAGTAA TTTTCTGTTA AGAAGGCAGT TGTAAAGAAT GTGTTTATAT 002560 002561 AAACCTAAAA ATGCCTTTTA CTGCTAAGTG GGGAGATGGG GGAAATCCAT GGAAGAGAGA TTTAAGACTT ATTGATTGTA 002640 002641 CATCAGTCTC TTCATATCAC ATATACATGT ATATATATAA AACTCTAATG TAGTATAACC TTGTTAAATA AACCATGATG 002720 002721 ATTTATTAAA CTTG |
Predicted Small Protein
Name | NONHSAT128274_smProtein_1625:1756 |
Length | 44 |
Molecular weight | 4829.5905 |
Aromaticity | 0.116279069767 |
Instability index | 79.2418604651 |
Isoelectric point | 4.53509521484 |
Runs | 7 |
Runs residual | 0.0054873268879 |
Runs probability | 0.0241375829611 |
Amino acid sequence | MFIFSLHISCLNIFLNDQSTSRSCFIYSLIQGLEALLISSDGM |
Secondary structure | LEEEEEEHHHHHHEELLLLLLHHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |