NONHSAT128319
Revision as of 07:06, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128319 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1260 nt |
Genomic location |
chr8+:112000263..112002710 |
Exon number |
2 |
Exons |
112000263..112000924,112002113..112002710 |
Genome context |
|
Sequence |
000001 CTTCGTCACA CTACTTTCAT TTTAGTAAAA AACAGAGACT CAAATCCATC AAAACACCGG CCAATGTCAT ATCCTGTATG 000080
000081 GAAAATGAGG AACATGAAAT CTGTTCTTAA AACCACCAAT TCAGGATTAT GTTCATTACT ACATGGCCTC CTAAGTTTAC 000160 000161 TGACAAACCT AATATTATAT GTCTAACTAG GTCTGCCATA GAGATGGCTA AGaattttat ttattttttt aaataaCTCA 000240 000241 AAATTAAAAC AAGATCAAAA GTTACTTAGA TTCATCCTGT CCATTCTTTT CCATCAATTC AGTGGACTCA CTTGATTTCC 000320 000321 ATGTTGGATT TCCATCTCTT CCTTGTGCAT TTTAGTTATT TTTTTGAGTA TGCGAAATAT TAACCATTTA TGAAAACATT 000400 000401 CTTTATAACA ACGTATACAC ACACATTCAC TTTTGACCAT AAAAAATATT GTAAGGAggc cggatgcagg ggttcacgcc 000480 000481 tgtaatccta acactttggc aggctgagat ggatggatca cgaggtaagg agttcgagac cagcctgacc aacatagtga 000560 000561 aatcccatct ctactaaaat aaataaataa aaacaaaatt agctgtgtct ggcagtgtgt gcctgtaatc ccagctactc 000640 000641 aggaggctga ggcaggagaa tcttttaaaa aaagtatgca ttacattgct catgtacatt agtgtagatt catgaattct 000720 000721 gattttattt tttgtgtaat actctagtat ggaccattat cttttgtggc tcatattgtc tcatgtttgg ttggacatta 000800 000801 tgaacctctt aaattgattt tctatctatt acacaacttc atcatgcttt gaatactttc atacgttttg ggaccattct 000880 000881 tatattggtt ctagttccat tttgaacatt tgtatgctac tcctgcaatt atccatttct ccaatgagtc tggtttctaa 000960 000961 ttctggagat ggaaattcac aaaataatat ccaggtctta gatatactca ttgagttgtc actacttatc ggtcttctca 001040 001041 gggaatagag ataaatgcat cacacatgca tacacacaca catacacata cacatacaca cacatctctc tctctctctc 001120 001121 tcccccacct cccctccctc cacctgagtt cacactgaca cctggtccac aaggtttatt ttagccttca tttttaaatt 001200 001201 tttatctgct ttatctgaca gtgaaaaatc tacctcttat tatccacatt ttgtttgttt |
Predicted Small Protein
Name | NONHSAT128319_smProtein_128:235 |
Length | 36 |
Molecular weight | 4214.0237 |
Aromaticity | 0.2 |
Instability index | 44.4457142857 |
Isoelectric point | 9.51531982422 |
Runs | 7 |
Runs residual | 0.0188861985472 |
Runs probability | 0.0143967496909 |
Amino acid sequence | MFITTWPPKFTDKPNIICLTRSAIEMAKNFIYFFK |
Secondary structure | LEELLLLLLLLLLLLLEEELHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |