NONHSAT130364
Revision as of 07:13, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130364 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1973 nt |
Genomic location |
chr9+:20873842..20875814 |
Exon number |
1 |
Exons |
20873842..20875814 |
Genome context |
|
Sequence |
000001 TGGTGATGAC TGGATTCTGG CACTTTATGG TTATAGAAAC CACTTTTATA TATTTTGATT TCCTCCCCTA ATGCTTAATT 000080
000081 ATCTCCATGT GGACATTATG ATAGAGTGTC ATTGAAGGTA TTAAAAATGT AATTAATTGC TTAACAGTTA TATCTTGTGA 000160 000161 AAACAATGTG GAAATCTTTT TACATTTTTA ATTTTTGGTT CAAACAAACC TAACTAATCA AAGAGCAGCC ACAAAAATCC 000240 000241 TCAAAATGCA AATTAGACAC AATAATGTAC AGCTACCAAT TACAGATTTT AGTGTTTTTG TATTCCACAG CAACAAACTG 000320 000321 CCAAGTCTTA AAAAAAAAGA AGTCAACTAA AGCATTCTGT TGTTCCCTGA GCTCTACTGT ATATTCTACT GGAAGATTTT 000400 000401 AAGCTCTGTC ATGGACATAT GACTAGAATC ACAAATTTTT TAAAAAGTGT TCAGACAAGG CAAATATCTA ACTATGAGCT 000480 000481 ATAGAAGTTA AATATATTGA GTATGTCAGT GTTTGCATTT TATTTTTGGA TGGTATAGAA TTTTATTAGT TTTCTATAAT 000560 000561 AATCATTGCT TATACTGGCT TACAGTGATT TACTGTATTA ACATAAGCTT TTTATACAGA TCTGAGATTG TATCTAATAA 000640 000641 GATGACTAGA GTCATGACCA TTTAGTTAAT CTAAAAAATG AATAGATTTT TAAAAAATTA ATTTCAGTGG TCTTTTATGT 000720 000721 TATAGAGTGA TGGAGTCTAA CAAAATTTTA AAATCTTGTC ACAAAAAAGG ATACAGAAAA GATTTTGCAT AATGTTTTAT 000800 000801 TATTATCCTC TCTATGATCT TTTCGCTTAT CATTTCAGAT AAGACCAGAA ATTCCCATTC CTGAAGAGTT AGATGACGAT 000880 000881 GAAGATGTTG AGGATGTGGA TCTTTCAGTT CCTGGCTCTT GCTATCTCAA ACTGTTGTCA CTCACTCCCC CTTTGGTTTT 000960 000961 ACCAGGTGAC TCCTATTTGG TAGTAGAGAA GCTAGCATTT TTTAGTGGTT CGATTTGTCT GATTGTATTC TTTTGTGATA 001040 001041 GGTACATAGT ATAGTTTAAC CTTATGTGCT TATTTTTTAA CCAGAATGTT AAATGCACCC ATCTGTTCTA TTGAAACAGC 001120 001121 TTGAGGTAGT ATGGTGTTTA AATCATACGA AAAAACGTTA CATCTGAGTA GGATTGAACA AGAAAACTAG TGTAAACAAT 001200 001201 TGTGTTCACT GATAATTAAA ATTCATTTAA AAGGCTAAAT GTATTCCACA AGATGAATTT GCACTGGTAC TCTAGGTCAT 001280 001281 TGATTTAAAC AATACTTCTT TCTTACATAA GCCAAGTGAA AAGATCATTA GACTATTCAG AGATTTACTG AGTAGTTTCA 001360 001361 TTATTATACA TTTATTCTTT CTATAGAGTT ATGCCAAAGA TGTTACTGAT ATTTATTTCA GAGCTATAAA TTAATGCTTT 001440 001441 TAAAAGATGG ATCAAATTGT ATGGTCATTC AGCTTTGATG TAAAGCTTAT AGGGCCTTTA TCTTTTAAAA AGTAggctgg 001520 001521 gtatgatggc tcacgcctgt aatcccaaca ctttgggagg ctgagagagg cagattgctt gaggtcagga gttaaataca 001600 001601 aaattagcct ggtgtggtgg tgcatgctgt agttccagct atttgggtgg ctgaggcaca agaatcactt gaagctggga 001680 001681 ggtggaggtt gcagggagct gggatcatgc cactgcattc cagcctaggt gacagcctag gtgacagcct aggtgtctca 001760 001761 aaaaaaaaaa aaaGTATTCT AATGCTTATA TGTGGTAATT ATTCTATATG TATATTGTGT TTAGAAGTAC TCACTTGCCC 001840 001841 CTATTACTAT ATGCCCTACC CAAGAAATGG TAGACGATAC CATTTGAAAA ATATGTTTGA TTGTGGACTG TGATTAGGAA 001920 001921 CTTACATTAT TTTATTTTGA ATGTTATTTT CTGATCATTA AAAAGTTATT TAC |
Predicted Small Protein
Name | NONHSAT130364_smProtein_1706:1912 |
Length | 69 |
Molecular weight | 7722.1476 |
Aromaticity | 0.102941176471 |
Instability index | 61.4514705882 |
Isoelectric point | 8.89776611328 |
Runs | 9 |
Runs residual | 0.00814785373609 |
Runs probability | 0.0734852499557 |
Amino acid sequence | MPLHSSLGDSLGDSLGVSKKKKSILMLICGNYSICILCLEVLTCPYYYMPYPRNGRRYHL KNMFDCGL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLEEEEEEELLLLLLEEEELLLLLLLHHHH HHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL LLLLLLLL |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii iiiiiiii |