NONHSAT130368
Revision as of 07:13, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130368 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1126 nt |
Genomic location |
chr9-:21015136..21026744 |
Exon number |
3 |
Exons |
21015136..21016009,21017808..21017909,21026595..21026744 |
Genome context |
|
Sequence |
000001 ATTTTTAACC CACGGGATAC AGATTCAATG GTTGACACTT TTTATGCTAT TGGACTTGTG ATGCGACTTT GCCAATCCGT 000080
000081 ATCTCTCCTG GAACTGCTGC ACATATATGT TGGCATTGAG TCAAACCATC TTCTCCCAAG GTTTTTGCAG GAGATTTTCC 000160 000161 CCTCTGTCCT CTTCAATTAA GGGATGACCT GACATCATGG ATAGCTTACA ACTCTGGAAA CCAGGAGACT TCGGATATAT 000240 000241 ATATGTTTCC AGCTCACAGA AAGAATAATC ATCCTTTTTG TGGTGATCAC CAGTCAAGAG GAAGTCCAAG AGAAATATGT 000320 000321 GGTGTGTGTT TTATTCGTCT TTTGGAATCT ATTGGATATG GTTAGGTAAG AAGGCAAAAT AATCTCTTAA AACAAGGCTA 000400 000401 AATTGCTTTC TGCAGTGAAA CCAGTACTAG CAGTAACCAG AGGTTACTTG GTACGAGAGA GGAAAACATA ACCCCTTTTC 000480 000481 AAATTATTTT ATCTTGATAT GGAAATGTAT TTTTAGTGTT CTCCATAATG GGCATATCAA AGATAATGAA AACCTACCGT 000560 000561 GGTATTACAA GAGTAAATCA GCACATTCAG GTTTCTGCAG AAGGCTTGGC ATAAAACCAA CTTGGAATAA CCCTCAGCTG 000640 000641 TTTCCTAACA AAGGCATTCC TCACAATTGC TTTAGTACGG TTGCTTTAAT AAGCAAAGCA GGTCTTTTAT TGTATCACCA 000720 000721 GAATTTACAG TTAGTTTCTG TGCATTCAAG AATCTTTTAA ATATAGGGCC TCTCAGGAAG AAAATGCACT CTCACATTCA 000800 000801 TTTACAATTC CAGTGGGTTC AAATGACTAA CTTAAGTCCT TTTAGTGCTA ATTCTAAAAC TTTGCAGTGA GATGTGCCTA 000880 000881 GTCTTACCTC TACAAGTGGT GGTGTCAAAC AGTCCCCTTT GCTCAGTGAG TGCTTACGCC TCACTCTGGG GAGGTGTCCT 000960 000961 AACTGCTAGG TCAGCTTTCC TAAATAAGAA CCGTCCCTCC TACTTGAGAG ATCTGGATTT GAATAGGTAA CAAAAGAGCC 001040 001041 CTAGTTTGTT TTTCAGCCAA GGGTATGTAA ATTTTTTCAT TATATTGTCA ATAACTTAAC TGAATTAAAA TATGTTTAAA 001120 001121 TAATAA |
Predicted Small Protein
Name | NONHSAT130368_smProtein_242:364 |
Length | 41 |
Molecular weight | 4531.1483 |
Aromaticity | 0.1 |
Instability index | 49.515 |
Isoelectric point | 8.65850830078 |
Runs | 6 |
Runs residual | 0.0280241935484 |
Runs probability | 0.0223458752871 |
Amino acid sequence | MFPAHRKNNHPFCGDHQSRGSPREICGVCFIRLLESIGYG |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLHHHLLLEEEHHHHHLLLL |
PRMN | - |
PiMo | - |