NONHSAT130793
Revision as of 07:15, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130793 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1446 nt |
Genomic location |
chr9+:33730334..33742281 |
Exon number |
6 |
Exons |
33730334..33730477,33731116..33731717,33731761..33731892,33732973..33733357,33738286..33738414,33742228..33742281 |
Genome context |
|
Sequence |
000001 AGGTGAGAAA GGACAGGCCT AGACAATGAA GCAAGGGGCG AGTGGGTGGA TGGGTAAAAC CACCTGCTCC TCAAAACAGC 000080
000081 CAGGCTCTGA GATGAAGCAG GAATCTGCAC TTAAACCGAG GCTGGATCCA TCCTAGGGAT TCAAGGGGTT TTAACTCATG 000160 000161 GTATGCTGTT TCTGCAGGCC TGTGTTGTCA AGCGAAAACA GAAAAGAGAA GGGAATTCCA CCTTTGCCCA CTGAGAACAC 000240 000241 ATCTATGCTG AGAACACATC TACCCAACTC CTCTGTCACA ACCCCTGTGA GAAGGTTCTG CCATCTCCCA GCCCTGAAGA 000320 000321 TTGTGAGGTC ATCTGACCAC TTATTACATT GCTAAACATG GCAGGATGTC ACCTGACTCG ACACTAAGCT GCCCATCAAT 000400 000401 CATCACATCC CCTTTCTCCC ACTTACTTTT CTATCACCCC GTAGATTCCC AACAGCTGTC CTTAAGTCCT CCAGGCTACA 000480 000481 GAAACCACTC TTGAAACAAT ATGTCAGCAT ACCATTAGTG CCCTTTAACT CATACCCTCA CTTCCCAGCC CCTCCTCTGT 000560 000561 GAACGAAGTC TCTCCTTACC TCTTCCTCCA GCACTAATCA ATCTAATGTT CCTTCACTCT TTTCTCCCCT CCCAGCTTCC 000640 000641 CTCCAACCTG CACCCAATCC CCCCAAATCC TTTCTCCTCT TTCTTTGCAA TTCTCCACAC CAAGACTGAA CACTTGTCAG 000720 000721 AAATGGTGCT CCCCCTGGGC CCCTCCGCTC CCTGATGGCC CTGGGCCTCC CTCCCGACAG CTGAGGCCCT TCCTGGATCT 000800 000801 CTACACGTCA CCAAGCTAAG CCAGTGTTCC AAAATAGTCT CCTGAACAAT GATGACAACT GCACAGTTAT TTTGGAAGTT 000880 000881 CAGGGAAGCA CCAGATTTAT TTTAAATGAT GGGAAGAGGT GTCAAATAAA GGTTATAAAA ACATTCCAGT AAATAAGGCC 000960 000961 AATGGTGGGT TGATAATATC TTCAAAGAAC ATGTTTAGGA TCATACGGTT CTTCTTCATT CTTCTCTGCA GAACTTCCTG 001040 001041 GCAGTGATGG CAGTGGAACA TTGGAAACAG AGATGAACAG GAGGTGGGAA GAGGAGGCTA AGTACATGTA GGCCTAAAAG 001120 001121 TCTCTGCCTT GGGAGATTTT TAACAGTCCT GGATGGAGGT AAGGAGGCAG GCGTGATTCT AAGATCTCAA GGAAAGGAGA 001200 001201 TTCTATGTCA CTCTTCTCTT CCCTTGGCCC TCAGACTGTT TACGAACAAA ATAATTTCAT CAACTTGCTG CATCCACAAG 001280 001281 AGGGAGCCTC GTGCCAGCTT CTCCAGCCAG GATGGTAGCC CCCAAGACTC TTCCTCTTCC ATCCACCTTT AGGTGcagca 001360 001361 tccaacaagg tcaaaatcac aatgtcttgc atggagaaac aagatcttat attggacact gattcatagc atatacagcc 001440 001441 ttctga |
Predicted Small Protein
Name | NONHSAT130793_smProtein_605:754 |
Length | 50 |
Molecular weight | 5423.268 |
Aromaticity | 0.102040816327 |
Instability index | 59.9836734694 |
Isoelectric point | 6.36700439453 |
Runs | 8 |
Runs residual | 0.00121345835632 |
Runs probability | 0.0301514750044 |
Amino acid sequence | MFLHSFLPSQLPSNLHPIPPNPFSSFFAILHTKTEHLSEMVLPLGPSAP |
Secondary structure | LEELLLLLLLLLLLLLLLLLLLLLHHHEEELLLLLLHHHHLLLLLLLLL |
PRMN | - |
PiMo | - |