NONHSAT131099

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT131099

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2096 nt

Genomic location

chr9-:37789213..37800732

Exon number

2

Exons

37789213..37791239,37800664..37800732

Genome context

Sequence
000001 ACCGTCCGCC GGGGACCGGG AAAGCTGAGA CACCGCCGGG TTTGGGGCGC CGCAGTCCCG GGAACGGAGG TAGAAGGCCC 000080
000081 TGAAGAGGCG TTTCAGGAGG AATGGGTTTT GCTTCCTGGT CCAGTTGTGC TCACTGGCAC ACTTCTGCAG CACAGCAGCT 000160
000161 TCTCCAGCAT CTGTTCCTGC TTTGATTGGT GGCCAGAAAC ACTCAGCAGC CAGCAGTGTT CCTTAGCACC CTATTGGGCA 000240
000241 GTTTTATAGC AGAGGCTTCC AGGAGACCCC TCCCCATGAA TACGTTTCCT CAGCAACGTA AAAGTGCCAG AAAATTCTAG 000320
000321 AGGGTGGATT TATAGGAAGT TCCACTGGAA GATTCCCAGT GACTTCTTGC CATTTAATGA GCCACAGCCA CACTCTCTTC 000400
000401 AAAAGGGTCT CAATCTGCCC TGGCTGGAGG CGAGAGGCTC CTCTTTGGGA ACTCTATCAC AGCATTAGAG TAGCAGCTGT 000480
000481 TCCTTATATC TGCTATTGCT ATACTCTTTA AAGCTCTCTA GTTCTTATTA GCCAGTGCTT CATTATTCTA ATACCCTGTT 000560
000561 ATAGCTAATA ATTCCTCATA TATTAAACTG TCTTTATTCA AATGAGCATG GTTTGTCTTC TGATTAGACC TTGACTGATG 000640
000641 AAGATATCTT AAGCTTTTCC ATGGATCCAT CTATGCCTGG ACCTTGTATA TAGAAGGAAT TCAATGAATA CAGTCCCTTA 000720
000721 ATAGCATCAT GACACACAGT TTTCTTATGT AGTTGTCACA ATTTCAGGCC CTTTCATCCT TACATTTATT GAGCAGTTAT 000800
000801 TGTCTGTGTT CAGGAATCTT GCTGTGTGGC AGGAGATAAG AGGAGAGAAT CAGTAGCTAG AAGAATACAA CAGCTAAAGT 000880
000881 GGCCTTGGTG AATAGTCCAG AATGATAAAA AACTTAGATC ACTAAAAAAA ATTGCATGAG ATGACACTGC AGAGATAAGG 000960
000961 TAGAGTCAGA TGATGACAGG CCTTGACTTC TATTGGGACA GGCAGTTTGC TGTGGCCTTG AGCATCTCTG CATGTGCTTG 001040
001041 CGAAGTATGC CAAACACAAG GCCTAACTTT CCCCTAATAC TGAACCATTT CTAGCTAGTC ACATCGGCAT TTAACTAGGT 001120
001121 TAAGATGACC ACAGCATAAC TACCATACAA CAGCTCACTC CCTCAGGGAA GGAGGCTGGT TGGTTTGCCA CTTGCTACAA 001200
001201 AAGATGCTAG GCCCTTAGCC CTGGATCCCT CAGTCATGGT GCAAACCACT GCATGTGCAA CCACTGTCCG GGCCCATTGC 001280
001281 ATTTACTCCA TAGGACTTGA GGACAGGCCA ACCAGTGCTA CCTTGCTGGT ACTCCTACTG TATGCTGTGT TGAATAATAA 001360
001361 ATTTCTTCAT CTGATCCACC AAATCTCATC TACATTGGTA CCAATGGAGT TGTGGCTGGT GAACCTGCTT TCTTGCTTAG 001440
001441 TCGTCTCCGT TGGAGTCTTG TTATTTCTTG CTATTCTCTA GGAGGTTGGG GCTCTTCTCT AACAAAGGGT GCCATGACAC 001520
001521 AGGCACACAC ACACACTACA AAATGAAAAT AAACATGAAC TAGAAAGATG TTTCCTTATT CAAGAAATGC AGATAAATGG 001600
001601 CAAAGCTGTT GGAAACCAGA AAACCATGTA ATTTTGAGTA TTTAAAATCA ATCCTGTATT GTGATACACT AAGACCAAAC 001680
001681 TTGAATGTTA TTCCACATAA GAATCTAGCC AACAGAATGT AGTTCAGATT TGGGAAATGA TGGTGAGGAA ACTATATTTT 001760
001761 ATGGAATTGC TAATACATTT AAAACAGTAG TTGGTAAGAA AAAAGCGTGT TCTGGGCCAG GTGTGGCGGC TCACGCCTGT 001840
001841 AATCCCAGTA CTTTGGGAGG CCGAGATGGG CGGATTACCT GAGGTCAGGA GTTCGAGACC AGCCTGGCCA ATGTGGCGAA 001920
001921 ACCCCGTCTC TACTAAAAAT ACAAAAATTA GCCGGGAGTG GTGATGTGTG CCTGTAGTCC CAACTACTTG CGGGGCTGAG 002000
002001 GCAGGAGAAT CGCTTGAACC TGGGAGGCGG AGGTTGCAGT GAGCCAAGAT CAAGTCACTG CACTCCAGCG TGGGCAACAG 002080
002081 ACCAAGACTC CGTCTC
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Predicted Small Protein

Name NONHSAT131099_smProtein_1235:1480
Length 82
Molecular weight 8892.667
Aromaticity 0.0617283950617
Instability index 41.4518518519
Isoelectric point 6.79864501953
Runs 8
Runs residual 0.0434142752024
Runs probability 0.0796789436495
Amino acid sequence MVQTTACATTVRAHCIYSIGLEDRPTSATLLVLLLYAVLNNKFLHLIHQISSTLVPMELW
LVNLLSCLVVSVGVLLFLAIL
Secondary structure LLLLLHHHHHHHEEEEEEELLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHH
HHHHHHHHHHHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHH
HHHHHHHHHHHHHHHHHHLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooTTT
TTTTTTTTTTTTTTTTTTiii