NONHSAT131099
Revision as of 07:16, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131099 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2096 nt |
Genomic location |
chr9-:37789213..37800732 |
Exon number |
2 |
Exons |
37789213..37791239,37800664..37800732 |
Genome context |
|
Sequence |
000001 ACCGTCCGCC GGGGACCGGG AAAGCTGAGA CACCGCCGGG TTTGGGGCGC CGCAGTCCCG GGAACGGAGG TAGAAGGCCC 000080
000081 TGAAGAGGCG TTTCAGGAGG AATGGGTTTT GCTTCCTGGT CCAGTTGTGC TCACTGGCAC ACTTCTGCAG CACAGCAGCT 000160 000161 TCTCCAGCAT CTGTTCCTGC TTTGATTGGT GGCCAGAAAC ACTCAGCAGC CAGCAGTGTT CCTTAGCACC CTATTGGGCA 000240 000241 GTTTTATAGC AGAGGCTTCC AGGAGACCCC TCCCCATGAA TACGTTTCCT CAGCAACGTA AAAGTGCCAG AAAATTCTAG 000320 000321 AGGGTGGATT TATAGGAAGT TCCACTGGAA GATTCCCAGT GACTTCTTGC CATTTAATGA GCCACAGCCA CACTCTCTTC 000400 000401 AAAAGGGTCT CAATCTGCCC TGGCTGGAGG CGAGAGGCTC CTCTTTGGGA ACTCTATCAC AGCATTAGAG TAGCAGCTGT 000480 000481 TCCTTATATC TGCTATTGCT ATACTCTTTA AAGCTCTCTA GTTCTTATTA GCCAGTGCTT CATTATTCTA ATACCCTGTT 000560 000561 ATAGCTAATA ATTCCTCATA TATTAAACTG TCTTTATTCA AATGAGCATG GTTTGTCTTC TGATTAGACC TTGACTGATG 000640 000641 AAGATATCTT AAGCTTTTCC ATGGATCCAT CTATGCCTGG ACCTTGTATA TAGAAGGAAT TCAATGAATA CAGTCCCTTA 000720 000721 ATAGCATCAT GACACACAGT TTTCTTATGT AGTTGTCACA ATTTCAGGCC CTTTCATCCT TACATTTATT GAGCAGTTAT 000800 000801 TGTCTGTGTT CAGGAATCTT GCTGTGTGGC AGGAGATAAG AGGAGAGAAT CAGTAGCTAG AAGAATACAA CAGCTAAAGT 000880 000881 GGCCTTGGTG AATAGTCCAG AATGATAAAA AACTTAGATC ACTAAAAAAA ATTGCATGAG ATGACACTGC AGAGATAAGG 000960 000961 TAGAGTCAGA TGATGACAGG CCTTGACTTC TATTGGGACA GGCAGTTTGC TGTGGCCTTG AGCATCTCTG CATGTGCTTG 001040 001041 CGAAGTATGC CAAACACAAG GCCTAACTTT CCCCTAATAC TGAACCATTT CTAGCTAGTC ACATCGGCAT TTAACTAGGT 001120 001121 TAAGATGACC ACAGCATAAC TACCATACAA CAGCTCACTC CCTCAGGGAA GGAGGCTGGT TGGTTTGCCA CTTGCTACAA 001200 001201 AAGATGCTAG GCCCTTAGCC CTGGATCCCT CAGTCATGGT GCAAACCACT GCATGTGCAA CCACTGTCCG GGCCCATTGC 001280 001281 ATTTACTCCA TAGGACTTGA GGACAGGCCA ACCAGTGCTA CCTTGCTGGT ACTCCTACTG TATGCTGTGT TGAATAATAA 001360 001361 ATTTCTTCAT CTGATCCACC AAATCTCATC TACATTGGTA CCAATGGAGT TGTGGCTGGT GAACCTGCTT TCTTGCTTAG 001440 001441 TCGTCTCCGT TGGAGTCTTG TTATTTCTTG CTATTCTCTA GGAGGTTGGG GCTCTTCTCT AACAAAGGGT GCCATGACAC 001520 001521 AGGCACACAC ACACACTACA AAATGAAAAT AAACATGAAC TAGAAAGATG TTTCCTTATT CAAGAAATGC AGATAAATGG 001600 001601 CAAAGCTGTT GGAAACCAGA AAACCATGTA ATTTTGAGTA TTTAAAATCA ATCCTGTATT GTGATACACT AAGACCAAAC 001680 001681 TTGAATGTTA TTCCACATAA GAATCTAGCC AACAGAATGT AGTTCAGATT TGGGAAATGA TGGTGAGGAA ACTATATTTT 001760 001761 ATGGAATTGC TAATACATTT AAAACAGTAG TTGGTAAGAA AAAAGCGTGT TCTGGGCCAG GTGTGGCGGC TCACGCCTGT 001840 001841 AATCCCAGTA CTTTGGGAGG CCGAGATGGG CGGATTACCT GAGGTCAGGA GTTCGAGACC AGCCTGGCCA ATGTGGCGAA 001920 001921 ACCCCGTCTC TACTAAAAAT ACAAAAATTA GCCGGGAGTG GTGATGTGTG CCTGTAGTCC CAACTACTTG CGGGGCTGAG 002000 002001 GCAGGAGAAT CGCTTGAACC TGGGAGGCGG AGGTTGCAGT GAGCCAAGAT CAAGTCACTG CACTCCAGCG TGGGCAACAG 002080 002081 ACCAAGACTC CGTCTC |
Predicted Small Protein
Name | NONHSAT131099_smProtein_1235:1480 |
Length | 82 |
Molecular weight | 8892.667 |
Aromaticity | 0.0617283950617 |
Instability index | 41.4518518519 |
Isoelectric point | 6.79864501953 |
Runs | 8 |
Runs residual | 0.0434142752024 |
Runs probability | 0.0796789436495 |
Amino acid sequence | MVQTTACATTVRAHCIYSIGLEDRPTSATLLVLLLYAVLNNKFLHLIHQISSTLVPMELW LVNLLSCLVVSVGVLLFLAIL |
Secondary structure | LLLLLHHHHHHHEEEEEEELLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHH HHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHH HHHHHHHHHHHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooTTT TTTTTTTTTTTTTTTTTTiii |