NONHSAT131317
Revision as of 07:17, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131317 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2249 nt |
Genomic location |
chr9+:42500527..42506814 |
Exon number |
2 |
Exons |
42500527..42501324,42505364..42506814 |
Genome context |
|
Sequence |
000001 TTTATTACCA ACATCGTTGG CATCCCTGAG TATGAGAGTT CAGAAGAAAC TTAGAGGCTA TTGTCTGATT CAATCCTTGC 000080
000081 AGCTTACAAA AAGAAATGTG GGGAGCAGTC ACTGTGTGAC TAGCCTGAGG TCACTCAGGA AGTTAGAGGC AGAACTGCAG 000160 000161 CCAGGGTCAC CTCTCTTTAC TGCTACTAGT GTGCTCCTTC TACTGCACCC TGATCATAAA ACATCTCCCA ACCCAGGAAC 000240 000241 AAGGTCTACC GCATAGGTGG GCACAGCAGC GTGATCACTC TCTCAGTCGT CTGTACTCCT CCTTTGCTTT GACCAAAGAC 000320 000321 ACAGGAAGGG ACCTTTTGCC CCACATAAAA CACCTCTCAG AGGCTTGGCA ACAACAACAG ATAATAGAGA GCATTGACCT 000400 000401 AAGACCAACA TTTCAACCAT GGTGTCAAAA CAATATTTTA TTTCAGCAAA GAAAAACTAT GTCACAAGTG GATTATTATT 000480 000481 ACTAATAATC AGACTAGTGG TACTTGCGAA TGACTTGGTT TCATACTCAC ACTTGGACAA CTATGCACAC TGAGTATAAC 000560 000561 TGACCTTATG AGAACATCAT TCTCACTAAG ATTATGATGT GCTTTCTCAC GTGGGAACTG TACATAATAT TGCGTGTACA 000640 000641 CTTGGGAGGA TGTCCTGCCT GTGATGTTGT CTTTCAGGGG AAGAAGAATG GTTGAGAACT GAGGGTATAT TAAACATTTA 000720 000721 CTCCTCCAGA TTTTTCAAGA TTTCTGTTAA GCCAGATCAG AAGAAAGCCA TCTATTTGGA TTGCATCACT CTAACCTGGA 000800 000801 AATACCAATA TTTTCTAAGC ATGGCAAGTG TTTCCAAGCA TTCAGAAGTG GAGAGTGTAG GAAATCCACT GCAGAATGAG 000880 000881 GTCTGCTCGT CATCCTCTCA GTCTCAACTG CTCTCCCTCC TTCATCTCTC TCTGTTTCAT TGGTGAGTAT AGAAGATCAG 000960 000961 GCATTTTTAT ATGAAATGAA AATTGATGGA ACTAAGGTGT TGATTTGAAT ATCCAACCGA CCTTTTATTG AGTGTCTATT 001040 001041 ACAAGTTAAA TTGTGTTGTA GAGAACAGCT CAGGAAACGA ATGCTTGACA TTGATGTACA TAACAGAAAT ACAAACATGC 001120 001121 CATTAAAAAA TCAGACCTCT TATGAGCATC CAGATTCTCA CGTAAGTTTT GTGAAGCTCT TTCAAAATGA GAATGTAAAA 001200 001201 TTTCAAAAAA AACATCATTT TCACAAGTCA TTCTTGAGAC AGAAAAGTGG AAATAGAAGT TCATATATGG TTGTTTCACT 001280 001281 ATCTCTAATC TTATGTACAG TTTTTAGTCA GTTGACAGCC ATATAATTCT TAGTTTTATA TACTGATAGT CATTAGAAAT 001360 001361 TACAAATTTT AAAAAATATT CATGTCTCAT TCTACGAATC AATGTAAAAA TTTCATTCAC TTGGTTATAT TTCTTCATTT 001440 001441 TACCTGGCCT TGACTACTTC TTTCCTGCCC AGCATTAAAT TTAATTAATG TCTAATTTGT TTACTTGGTT TAGTTATTTT 001520 001521 GGCCATGTTC AGTACACTTG TTATGAAGCA GGCATGTAGG AATGTTGACA AGTTTATGGT CCTCACTCTT CCAAATCCCT 001600 001601 AATGGCGGCA CCCCAACAGA CACATACCAC AATGTAAACA CATACACACA CACACAATCC GTGCCCACCC ATACTCACCC 001680 001681 ACGTACACAC AGACACACAC ACACACTCCA GTGGATCAAC ACATAAAACA CTCCACAGGC AGGCATCGTA CAGCAGGGAT 001760 001761 CTCTTAGTGC ACTACACACT TCTGTAAATT ATCAGGACTC TTCAATTGAG GTGAGTCTAC AGAGATTTCA AAAGCTATTT 001840 001841 GAGTGTTAAG CTATCTAACT AGTGGTTGGA CACTATTTAA ATAATGCATT AAACACAACT CTTGAGGCTC TGAAGAATTT 001920 001921 CTGTGCTTTC CAATTCACCA GGAGTTACAA GGTCCTGAAA ACCACAACTG TGTTACATCC TTTAATAGAT AAAGCAAAGC 002000 002001 TGATTTTAAT GTGAATATAC TTTATAGTTA TTTCTATTCC TGTTAATTTT TGTTTGCTTG TAATACACAT TTTTATGTAA 002080 002081 CTGGGAGTAA GGAACATCTT AGGAAAAAGA AAACAAAAAA TAAAATTTCG CTGTTTACAC TGTGCCTTGG TCCAGTAACC 002160 002161 CTGCACTGCA CATATACACT TTAAATTGGT GCCTTGGGGA ACCACTTCGG TATTTCTTTT TTTTTTCTTT TATGTTGTAA 002240 002241 ACCTTTCTT |
Predicted Small Protein
Name | NONHSAT131317_smProtein_593:694 |
Length | 34 |
Molecular weight | 3743.5103 |
Aromaticity | 0.121212121212 |
Instability index | 43.3787878788 |
Isoelectric point | 7.73870849609 |
Runs | 7 |
Runs residual | 0.0279973649539 |
Runs probability | 0.0257147904207 |
Amino acid sequence | MMCFLTWELYIILRVHLGGCPACDVVFQGKKNG |
Secondary structure | LEEELLHHHHHHHHHHLLLLLLLLEEEEEELLL |
PRMN | - |
PiMo | - |