NONHSAT131336
Revision as of 07:17, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131336 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4111 nt |
Genomic location |
chr9-:43027664..43031774 |
Exon number |
1 |
Exons |
43027664..43031774 |
Genome context |
|
Sequence |
000001 TGGAGGATCA CAGGGCAGGT GGGGCAATCC AGAGCTGTGG GGGCTTCCAT GGGAATTGGG AGGTCCCAAG GCAGAGGTAG 000080
000081 GGGTTCCACA GGAGGAGTCA CAGAGCCACC AAGGGCTCTC CTGGCCCAGG GAGCAGTCAA CACCATGGAC TGAACACCCA 000160 000161 CTGGGCTAAG CCCTGGGCCA GGCTGGGGCA TGTGGGGCCA GGAGGCAGCT CAGAGTGGGA GACAGAGACA AGTGTGCTCA 000240 000241 GAGGGCACCC ATATCTGCAT ATAACGTGGT CCTGAATTTC TGGCTGGGAA GTGCTTCCAG GGTTTCATAT GTGTTATGGA 000320 000321 GATGCTTCCT CTCTCCAACC TCACCGTGCA GGAATCCCAG TGAATATATT GCCACCATCT TGGAGCTCAG TGCCCTCATA 000400 000401 GTGTAACAGC ACCAGCAGAT CTGCCTGTGC ACAGACTTCC TGTACTACCT CACTCCTGAG GGGAGATGCT TCTGCAGGGC 000480 000481 CTGCGACCTG GTGCACAACT TTAGACACCA TCATCCTGGA GCGGCACTGC ACCCTCACTA GCCAGGGTGT TGATGACTTC 000560 000561 CTCAATGCCA AGGCCACGTT CAAGATTTTC GACTTCAGTG ATGCGTTTGT GCTGAGCAAG GTGGGCTTCT CCGGGATCTT 000640 000641 AATTCAGGAG GTAGAATGCA GCTTGAGATC TAGTGTCTGA TCAAAGAACT TGAACTTGAC CTGGAGGGCT CTGGGGAGCC 000720 000721 ATGGAAGGTG CTGGATAAAG GAAGGGACAG TCATATATAT TTTAGAGATG ACTGTGGAAG GCTGCCTGGA AGGAGTGAAC 000800 000801 AAGAGCCAGG AGACCAGGGA GGGAGTTTGT GGGGCAGGTC TGCAGATGGC AAGGGAGGGA TCCTGCTTGG ATGAAAGGTC 000880 000881 TTCAGGGACT GTCTCAGGTT ACACTCAGGT GCCCTCAGAG CTACTGTGTT CAGGGTTCTT GTCTCCAGGA TGAAAATAAG 000960 000961 GAGGAGTTGT CAGACAAGGA CATATACATG GAGGCTGGCA TCTTCATGAG TGCCAATCGT GGTCCTGGTG TGGACTACTG 001040 001041 TGGGAGCAGG GGTCTCTCCA TCCAGGGACA TGGTGGATGG ACCCTACATC ACTCCATTCT GCCCTTCCTT TCCCTCCCAT 001120 001121 TCTCCTGAGG GACTCAATGC ATGGGCACTG TCCAACCTCT GGTGCTGAAG CAGCCAAGAG ACCCAAGCCT GCCTTGCTGC 001200 001201 CACTTAGGAT ATGACAGCAC AGCCAGTGGC CTCTACTGGA TCCTGGTACC CCTCAGAAGA CACCCAGACA CTGGGAGTGC 001280 001281 TGCCACCTCG TGGTGCAAGA GTTCTGAGGG ACGGCAATTC TGAAGACATT GAATGGTGGG TGCTGGGCCT CATGGCTGTT 001360 001361 CCCCAGCCCC TCTCATTGGC TCTGCTCCAG GTGGAGAAGG GGGATGATGT CTCTGTCAGT TCTGCTGTTT TAGCCTAGAA 001440 001441 GGAAAAGAAG CAGAGCCCAG AAGCAGGGCC TGGTACCCAG CCTGCCTAAC AAGGGAGAAT TTGTAGGCTT TGTGGACAGA 001520 001521 AAGATCTGGG ACTCCATGTC ACCCACTAAC TTGCTGAGAC ATTAGTAAAA TCAGTTTTCT TTTCTGAACT ATGTTTCTGT 001600 001601 CATCTGTACA TTGAGAGGAA TTTCTTTTAC TCCACGAGGC TGCTTGGAGA ATTAGTGACA GTGTGTGTAG AGCATGTGCC 001680 001681 ACCCAGCAGG CATTTGGTGT CGAGACCACA CCTCCTCCCC CTTCATTTTC AGCCTAAATT TGCATTTTGT TCTTAAGACT 001760 001761 TTCACTCGCC TTAATTTTAC TCTTTCCTCT GATTCCCACC TTATCGTCTA TCCCATGGAG TCACTAGGAT CTAAGTGGGT 001840 001841 AACAGTCATG TATGCATGTA TGTGTATGTA CGTATATACT TTGTTGGTGT TGGAGTGTGG TGTGTGAATG TGTGTGTGTG 001920 001921 TGTGTGTGTT GGAGTTACTG GGTGACTGAA ACTGTACACA TCAGGCTGTG GTTCTGCCCA TTGCTGGAAG CGCTGTCAGG 002000 002001 GGTCCTGCCC TCAACCCCAG GTCTGACCCT TGCAGCGCAG GCAGGACATT CTGGAGGAAT CATGCCCTTG GGAGGATCCC 002080 002081 TGAGGAGTGA CTGGTGGGTA TTGGTGGATA AATACCCCTG GTCCCTTGCT CTGGGTATGA TGACTCTGAA GCACATGTTC 002160 002161 TGTGCTGTCT CTCAGAGGTA CCTGGCAGGG CTGAGTCCTG GCTGCCACAG TGGAAACTTT CTTGATGAAG GTCCCTTTAA 002240 002241 CTGCTGCATT CCTTTCCTGT CTCAGTTCCC CACTCCTCCA CTGATGTTTC CTGGGATTAG CACCCTAAGG AAGAACTGGC 002320 002321 AGTCGAATTA ATATCCTAGC GTTATCTCCA AACAAAATTT TTGTATTTGA ATCTTTGCCT CAGGATCTAC TTCCAGGAAA 002400 002401 TTCAGACTAA GACACACATT TTTCTTTTGG CTCCTTGAAT CCCCATAGGC CTGACATTTT GCTGTTTTTA TCAAAAAGGA 002480 002481 ACATGAGGAT CAGAGAGGGA AAGTCACTTG CCCAAAGTCA CCCAGCTGAA CAGTGGTAGA GTTCAACTTT GATCATGAGA 002560 002561 TGTCTGGCCC CCAGGTGGAG GCTTGCTCCT CTCCCATGAG ACTCCTTCCT TATCAGGGTC AAATGAATGA ATGGAGGATG 002640 002641 TTAAAAGTGG GGTCTCTGAT GCCTTTGCCA GATAAACCCC AGGCTCATGG CTGGCGCCTG TTTTCTCATT CTTACCTCAT 002720 002721 TAAGAGTAGT AATGAAAAAC ATGCTCAGTG CTGACCGTGT GCCTGGGGGT GTTGTAGGCA CTCCACTTAC TTTAATTCAT 002800 002801 TTAATTTTCA CAATAACCTT GTTTTTACTT CTAGTTGTTA TATGAAAAAA CTGAGGCAAA GAGCAATACA GAGAGTTGCA 002880 002881 AAAATTCATA CCGCTGGTCC AGGTTTGAAC CAAACAGTCT GCACCTGGAG TCCTTGTTTG TAACCATGGC ACCCTGTCTT 002960 002961 CACACATATC TCATCGTGGA GTTCCATCTT GTGTTAGGCA TGGCACTGAG CAGCTTCTTT TAAGAACATA ATTTGTAGCC 003040 003041 AGGCGCAGTG GCTTATGCCT GTAATCCCAG CACTTTGGGA GGCCGAGGCG GGCAGATCAC GAGGTCAGGA GATCCAGACC 003120 003121 ATCCTGGCTA ACTTGGTGAA ACCCCGTCTC TAATAAAAAC ACAAAAAATT AGCTGGGCAT GATGATTGGC GCCTATAGTC 003200 003201 CCAGCTACTT GGGAGGCTGA GGCAGGAGAC TGGCATGAAC CCGGGAGGTG GAACTTGCAG TGAGCCGAGA TGGCGCGACT 003280 003281 GCACTCCAGC CTGGGCGAGA GAGCAAGACT CCATCTAAAA AAAAAGAAAA AAACATGATT TGTAATTATG TAAATTACTA 003360 003361 ATTCTACTTC AAAGTGCCAC ACAGCCTTCA TGTGATAAAA TGAAGCAATT GGTAAGTCTA AGCATTGAGA AAAAACATTA 003440 003441 TTTTTCCCAG CTCCATTGCA ACAGTTGGGA CAGTGTTTTC TCTGTGCCTA TAGAAACCTC AGCTAGTGTG CCGAGGAGTC 003520 003521 TGGTCCCTTT GGGGAATGTG GCAGTCAGGT TCTGGCAGGG ACCTCGAAGT GGCTGGTAAT GTCTTTCATT ACCACCACCA 003600 003601 CGTGACCTGG TCTTACGACC TGTTAGCTTC CTTCATCAGG CATGAGCACC AGGATGGCAG GGGCCTCATC TGTCCTGTTC 003680 003681 CTCCTGTGGC CTGGGTCCTA GCACCATGTC TGGTACAGTG TAGGTGCTCA AGGGAAGTTT ACTTTATAGA ACTGTCTACC 003760 003761 TGGGAGATGT TGCTGTTAGT CTAACCTGTA CCATTTTGTA AACCTGCAGC CGTTTTGCAC ACCCTGGTCA GAATGAAACA 003840 003841 TTCCTTGGGA ACTCGGGCCG TGAGAAGCAT CCTTCCTGAT CACCTGACTG TAGAAACATC CTTATCGCAC CCTCCCGGGC 003920 003921 AAAGGCCCAA CAGCCTGACT GCAGGAACAT CCTTGCCATA TCCTGCCGGG CAGCAAGCTC TACCGCCCAC ACCCCTCCTT 004000 004001 CCCAGTCCCA TGATCACCCC AGCCTGTGAG AGGCAGTTGG TGCTGGCAGT AAGCTGGTTT CCTCCTCTGC AGGGTTTTGC 004080 004081 TAGTAATAAA GGTGTTGCTG TTGAAGCCGT C |
Predicted Small Protein
Name | NONHSAT131336_smProtein_1673:1906 |
Length | 78 |
Molecular weight | 8857.4355 |
Aromaticity | 0.142857142857 |
Instability index | 52.9246753247 |
Isoelectric point | 6.87042236328 |
Runs | 14 |
Runs residual | 0.0457368718238 |
Runs probability | 0.0687094657683 |
Amino acid sequence | MCHPAGIWCRDHTSSPFIFSLNLHFVLKTFTRLNFTLSSDSHLIVYPMESLGSKWVTVMY ACMCMYVYTLLVLECGV |
Secondary structure | LLLLLLEEEELLLLLLLEEEEEHHHHHHHHHHHLEEELLLLEEEEEELLLLLLLEEEEEE HHHHHEEEEEEEEEELL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLHHHHHH HHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooTTTTTT TTTTTTTTTTTTiiiii |