NONHSAT131725
Revision as of 07:19, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT131725 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2195 nt |
Genomic location |
chr9+:70871837..70885811 |
Exon number |
5 |
Exons |
70871837..70871896,70873448..70873485,70874263..70874350,70879384..70879430,70883850..70885811 |
Genome context |
|
Sequence |
000001 GTGCAGTGGC TTCTATGTTT TGGGTTGATG CTGAATTAGG GAGTGATATT TACCTTGATG GTATCATAAC TATTGTGGAT 000080
000081 TCAAAATATG GATTAAAAgt gaaataccac taaaggcaga agagaatgaa atcatcccac ccactgaccc gttcccaatc 000160 000161 tgagcatatg gatagggccc aaagcaCATT TAACAGAAGA GAAACCTGAT GGCCTTATCA ATGAAGCTAC TAGATCCATA 000240 000241 AATGGACTAG GACAAATCTT AGAAACACAA AGATCAAGGT ACTTTAAAAA AGCTATTCCT ATTAATAACA AATCATTTTA 000320 000321 GTTATTAATA ATAAACATTA AGTAATTGAC AAATATGCTT GATTCTGATA TAAGAAAGAT CTAAGTGCAT TTAAAAAGAT 000400 000401 TTGGATCCAA AATGTTGTTT GGAATGCTCT TAATAAGTTA GTTTGGCATA TTTGACTAGT ACATTTGCCT GTCTTCAAAA 000480 000481 CTAAGATTAC AAAGCCATGA TAACACTGTG TAAGTGTTTG CTTAATGAGG AAGAAAAGAC TTCCAAACAC TCGAGAGGGT 000560 000561 AACTCAGTAC AGAAATCTGA AGTATATTGA GGAATCTTAA TTTGAAGTGT TTAAATGGCT TTTTAATATT TAAAAAGCCT 000640 000641 TCTTAGTGTT TTATAGTTGC CAAAAAATAC ATGGAGTCTT TACCTTGAAG TTCCTGACAA ATTCTTTTAT TAAATTTTGA 000720 000721 CTTTCATTTT CTCTAGGTTC TGTTCCTAAA ACATCTGTGA AGTGTATTTC TGTAGATTAA ATTCTGTTTT CCATTGAATG 000800 000801 TTATCTTAAT TTCAGAAAAT TTCTGTGCAG GGTTATTTTA TTAAGCTCAt tttttttttt tttttttttt tttttttttt 000880 000881 tttttttttG GTGAGAAAGG CTCAGCAGCT GATAGACTCA GCAACAGGCA GCCAGGAGCT CTGAGGCTCA CAGCTGGCAG 000960 000961 TCTAGTTCCA CTCAGTCTCT ACTTGAGAAA TTCTTTCTTT GGAAGTACAG CAGAGGCCTT AGGTGAGTGG CTTGTCTGCT 001040 001041 ATGGCAGAGA TTAGAGGTGC TGACAGACTG CCATAAGTAT TAGGCAGTAA CAGCAGCAGC TGCTTATATG CATGTGAACA 001120 001121 GCTGGGGAAT TAATTTGGTA TGCATTCTCA GGAGCCACTC ATCTGCTGGC AGAGGTAGCA GAAGAATGCC CTTAGTGTAA 001200 001201 GTCCTCTACA ACCATACACC AAATGTGCTC CCTGCGTTTC AAATTCCATT GTAGAGAGTC TCTGATAATC TCACTTATAC 001280 001281 CATGAGCCAT TCCTCAGTAT CTGTCCTCTT CCTGTTAGTG TTCTACAATT CCTTTCTCCT TAATTTTTCT CCGCTTTACA 001360 001361 AAATGTCACA CAGACAAGTG CATGATACTT AAACAAGCTT TTAAAAATAA TGCTCATAAA TAGCTTTGGT TCTGTCATAA 001440 001441 TATTCGTATT TATAAACATT TTAAGTCAAT TCTCTTCTTT TATTTTCATT TCAGAAATAT CCATGTCCTG AATAAAAGTT 001520 001521 GTGTCTTGAT TAGTTTATTA TGTAACAATT TAGTGTGTTT GACATTTCTA ACTTTTATTT CTAACATTTG CTTTATTATA 001600 001601 GAACAATAAA CATGCAGTGA TTGATTTTTC TTACTTCAAG TGGATGAGTG AGCAAGTGAC TAAAATCTTC TGTGAATTCT 001680 001681 TCAGTGTATG GTGCTTGCCA ATGCATCTGA GAATCTAGGG ACTTTCTGAA ATAGTACTTC CTTGCTATGA GGACTGAAGT 001760 001761 TGGATTAGAA TCCTTTTCAA TGAAGATCAG ATGTCCTGAG TAGAATTCTT ACTATTGGGT CCTGAATCTT ATATTAAATA 001840 001841 TTCTCTCAAA TTCCTTGAGG CATAGCAACT TGAGCTTACC AGTTTAGAAA CTGGAGATTT Gggctgggca cggtggctca 001920 001921 cgcctgtaat cccagcactt tgggaggcca aggtgggcgg atcacgaggt caggagatgg agaccatcct ggctaacact 002000 002001 gtgaaacccc atctctacta aaaatacaaa aaattagctg aggctggtgg tgggcgcctg tagtcccagc tactcaggag 002080 002081 actgaggcag gagaatggcg tgaacccggg aggcggagct tgcagtgagc tgagatcgca ccactgcact ccagcctggg 002160 002161 tgacagagcg agactctgtc tcaaaaaaaa aaaaa |
Predicted Small Protein
Name | NONHSAT131725_smProtein_1409:1510 |
Length | 34 |
Molecular weight | 3732.4062 |
Aromaticity | 0.181818181818 |
Instability index | 63.2242424242 |
Isoelectric point | 3.99884033203 |
Runs | 8 |
Runs residual | 0.0583003952569 |
Runs probability | 0.0666732909379 |
Amino acid sequence | MLINSFGSVIIFVFINILSQFSSFIFISEISMS |
Secondary structure | LEELLLLEEEEEEEHHHHHHHLLEEEEEEEEEL |
PRMN | LLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | i???????????????????????????????? |