LINC01527
Revision as of 05:01, 23 June 2016 by Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== LINC01527 ===Approved Name=== long intergenic non-protein coding RNA 1527 ===Previous Symbols=== _ ===Synonyms=== lnc-SPRR2D-1 ...")
Contents
Annotated Information
Approved Symbol
LINC01527
Approved Name
long intergenic non-protein coding RNA 1527
Previous Symbols
_
Synonyms
lnc-SPRR2D-1
Chromosome
1q21.3
RefSeq ID
XR_241125
OMIM ID
_
Ensembl ID
ENSG00000224308
pubmed IDs
25045670
Sequence
>gi|767911421|ref|XR_241125.2| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 1527 (LINC01527), ncRNA
000001 AGGAATTCTG TTTTAATTGT TTGAAAACAG GAGCTGAGGG GAAGCGTGGT AGGAGAAGAT GCCTGTGCAT GCCGCTCATG 000080
000081 TTTCCAGCAG GGCAATGTAG ATGCATGTCA GGAAAGATGA TTAGATAGTT TAGAACCAGA TCCTTGTCTG AGATGGAAAC 000160
000161 TGCAGCTGCT AATTAAGAAG AGTAGAGCTC GAGGAAGCCG CCAGCTGCCA GCCTGGTGCT GCCTCTCCTG CAAGTGTGAA 000240
000241 GTGTGGCTGC ATCCAGAAGC ACTGAAAATA ATTGATTAGA AAGAGAAAGA GACTGAAAAT GTCATAAATG AGGAGATAAT 000320
000321 TGGAGAAAAT CATTGTGAAG AGGTATGAAT GGATGGCAAC ACAAATGGAG TAAGACTTAA AGAGATATAA GCCTACCAAA 000400
000401 TGCTGACATG ATTTTTGTGA GTTGTGAAGA TTTAAAGAAA TCTGTTTGAA TAACAATTTT TGAGGCTACC TATAAATTTG 000480
000481 TGTTCATTAC TTCCACTAAG CAAGGTTCTT TTGATTATTC TTTGATCATT GAAATGTTTT ATATTTTATT TAATTTACAG 000560
000561 CAACAAAAAT AACTCTTGAG AAGAAATAAA TGTGAACCTA TGGAGATAAT TATTTAGTAA TGTTTGAAAT ATATGATTTA 000640
000641 GAACATTTCA TTGCACTTAT TAATGAGTAT AAGAATATTA TGAAAACAGA AAAATAATGA GCCTTGTAAG AGTTCACACA 000720
000721 ATTATTTTAT GTAATTGGTA TTCTATATTC AAGGAGAGCT TGAATGCAGA AATTAAAGAA GCATATGCTC ATTTGAAAAG 000800
000801 AGACAAATCT AGTAGTGTAA TTAAAGCTTG TGCCTTATAA CACAATAAAA ATATTCAGAA GGATTTTATC CTTAATTGTG 000880
000881 ACATAAAATG ATTTCTAACC TTTATTTTTT GAGTCAGAAA AAACGGAGGA AGCATGGGTT CTTCTTTGCT ATATGAAATC 000960
000961 AAAGTAACTT TACAAATTTG AAGTGCTTAG TTATCTAAAA TCATATCATG GAAAGATATA TATTTATATT TTGATTGTTT 001040
001041 TATGTATGTA ACTTTTTAAA GATCAGAGTG ATCTGGGCAA GAAACCAGTG CTATCAGCCA GTATTGCATT TTGTTTACAT 001120
001121 GTAATAGAAA TCCAACTAAA CAAGGATTTT ATTTTCATCA TGTTACAGAA AGTTAGGATA TAGGAAGTCC TTCCTTGTAG 001200
001201 TTGCTCAAGG AAATCATGAA GGACCAAGTT TATTCTAGCT TCCTGCTCTG CCACCTTTAG CAAGTGGACA GTCCCCCTAC 001280
001281 CTCTCATAGG CAATGAACTT CTTCATATCC AAGCATGTGC TTAGGGCAGA AGAAAGGGAT TGGTGAGAAC AAAAATCACA 001360
001361 TGCCAGTGAA GTCTGTTCAT CTTATATTAG GAAATAATAG CTCCTGCAAA TGTCTTACTT GATAGGCTTC TACCACTGGA 001440
001441 ACTGCCTCAC ATGACTACCA CTAGATAGAA TGGAATCTGG CTTGATGAGT ATTTTTAAGT GGATACATTT ACTTCCTAAA 001520
001521 CAAAACCAAT ATTCTATTAA TAAAAGAGAA AGGAAGAAAG ATTCTTGTAA GGCAGCTAAT ATTTCTGTCA CACAGAGAAA 001600
001601 AACAAATTGA TAATGCAGTA CAAGGTTGAT ATTTTAAGGT AGAGATTTTT AGCTTGAGCA TTTAGCATCC ATTTGTTCTT 001680
001681 TTAATGTAAA TGTCAAACAA AATACAAAAA TCGTATGTAT AATTACCAAA AACTATTTAA AAGTAAATTT ATAATTCACT 001760
001761 CAATAGAGTA ATATAGATTA AATAATTTTT GTAAAATTTA ACGTGTTTTT GCTTTCAAAA AATACAAAAG ATAAAAAAAG 001840
001841 AATATACAGC TAAACAGTCT ATATGGAAAA AACCATAAAA GTGTCAAAAG TAAGATGATG GCTTATGAAA ATTACATTTT 001920
001921 TACATTTATG GATGTGACCT GAATGTAAAT GTAAGTAAAT TGTAAATGTA TTATAAATGA ATGTAAAAAC CAAAATAAAG 002000
002001 TTGTTTATTG GCAAGATTGA TTTAAAAAAA AGAAAA
000081 TTTCCAGCAG GGCAATGTAG ATGCATGTCA GGAAAGATGA TTAGATAGTT TAGAACCAGA TCCTTGTCTG AGATGGAAAC 000160
000161 TGCAGCTGCT AATTAAGAAG AGTAGAGCTC GAGGAAGCCG CCAGCTGCCA GCCTGGTGCT GCCTCTCCTG CAAGTGTGAA 000240
000241 GTGTGGCTGC ATCCAGAAGC ACTGAAAATA ATTGATTAGA AAGAGAAAGA GACTGAAAAT GTCATAAATG AGGAGATAAT 000320
000321 TGGAGAAAAT CATTGTGAAG AGGTATGAAT GGATGGCAAC ACAAATGGAG TAAGACTTAA AGAGATATAA GCCTACCAAA 000400
000401 TGCTGACATG ATTTTTGTGA GTTGTGAAGA TTTAAAGAAA TCTGTTTGAA TAACAATTTT TGAGGCTACC TATAAATTTG 000480
000481 TGTTCATTAC TTCCACTAAG CAAGGTTCTT TTGATTATTC TTTGATCATT GAAATGTTTT ATATTTTATT TAATTTACAG 000560
000561 CAACAAAAAT AACTCTTGAG AAGAAATAAA TGTGAACCTA TGGAGATAAT TATTTAGTAA TGTTTGAAAT ATATGATTTA 000640
000641 GAACATTTCA TTGCACTTAT TAATGAGTAT AAGAATATTA TGAAAACAGA AAAATAATGA GCCTTGTAAG AGTTCACACA 000720
000721 ATTATTTTAT GTAATTGGTA TTCTATATTC AAGGAGAGCT TGAATGCAGA AATTAAAGAA GCATATGCTC ATTTGAAAAG 000800
000801 AGACAAATCT AGTAGTGTAA TTAAAGCTTG TGCCTTATAA CACAATAAAA ATATTCAGAA GGATTTTATC CTTAATTGTG 000880
000881 ACATAAAATG ATTTCTAACC TTTATTTTTT GAGTCAGAAA AAACGGAGGA AGCATGGGTT CTTCTTTGCT ATATGAAATC 000960
000961 AAAGTAACTT TACAAATTTG AAGTGCTTAG TTATCTAAAA TCATATCATG GAAAGATATA TATTTATATT TTGATTGTTT 001040
001041 TATGTATGTA ACTTTTTAAA GATCAGAGTG ATCTGGGCAA GAAACCAGTG CTATCAGCCA GTATTGCATT TTGTTTACAT 001120
001121 GTAATAGAAA TCCAACTAAA CAAGGATTTT ATTTTCATCA TGTTACAGAA AGTTAGGATA TAGGAAGTCC TTCCTTGTAG 001200
001201 TTGCTCAAGG AAATCATGAA GGACCAAGTT TATTCTAGCT TCCTGCTCTG CCACCTTTAG CAAGTGGACA GTCCCCCTAC 001280
001281 CTCTCATAGG CAATGAACTT CTTCATATCC AAGCATGTGC TTAGGGCAGA AGAAAGGGAT TGGTGAGAAC AAAAATCACA 001360
001361 TGCCAGTGAA GTCTGTTCAT CTTATATTAG GAAATAATAG CTCCTGCAAA TGTCTTACTT GATAGGCTTC TACCACTGGA 001440
001441 ACTGCCTCAC ATGACTACCA CTAGATAGAA TGGAATCTGG CTTGATGAGT ATTTTTAAGT GGATACATTT ACTTCCTAAA 001520
001521 CAAAACCAAT ATTCTATTAA TAAAAGAGAA AGGAAGAAAG ATTCTTGTAA GGCAGCTAAT ATTTCTGTCA CACAGAGAAA 001600
001601 AACAAATTGA TAATGCAGTA CAAGGTTGAT ATTTTAAGGT AGAGATTTTT AGCTTGAGCA TTTAGCATCC ATTTGTTCTT 001680
001681 TTAATGTAAA TGTCAAACAA AATACAAAAA TCGTATGTAT AATTACCAAA AACTATTTAA AAGTAAATTT ATAATTCACT 001760
001761 CAATAGAGTA ATATAGATTA AATAATTTTT GTAAAATTTA ACGTGTTTTT GCTTTCAAAA AATACAAAAG ATAAAAAAAG 001840
001841 AATATACAGC TAAACAGTCT ATATGGAAAA AACCATAAAA GTGTCAAAAG TAAGATGATG GCTTATGAAA ATTACATTTT 001920
001921 TACATTTATG GATGTGACCT GAATGTAAAT GTAAGTAAAT TGTAAATGTA TTATAAATGA ATGTAAAAAC CAAAATAAAG 002000
002001 TTGTTTATTG GCAAGATTGA TTTAAAAAAA AGAAAA
Predicted Small Protein
Name | LINC01527_smProtein_1469:1609 |
Length | 46 |
Molecular weight | 5422.2738 |
Aromaticity | 0.0652173913043 |
Instability index | 55.2934782609 |
Isoelectric point | 10.2235717773 |
Runs | 9 |
Runs residual | 0.0342908902692 |
Runs probability | 0.0326895522974 |
Amino acid sequence | MESGLMSIFKWIHLLPKQNQYSINKRERKKDSCKAANISVTQRKTN |
Secondary structure | LLLHHHHHHHHHHHLLLLLLLLHHHHHHLLLHHHHLLLLEEEELLL |
PRMN | - |
PiMo | - |