LINC01613
Revision as of 05:08, 23 June 2016 by Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== LINC01613 ===Approved Name=== long intergenic non-protein coding RNA 1613 ===Previous Symbols=== _ ===Synonyms=== n341773 ===Ch...")
Contents
Annotated Information
Approved Symbol
LINC01613
Approved Name
long intergenic non-protein coding RNA 1613
Previous Symbols
_
Synonyms
n341773
Chromosome
9q33.2
RefSeq ID
NR_132393
OMIM ID
_
Ensembl ID
ENSG00000261432
pubmed IDs
26269497
Sequence
>gi|916539824|ref|NR_132393.1| Homo sapiens long intergenic non-protein coding RNA 1613 (LINC01613), long non-coding RNA
000001 GTTCTGATAC TCATACTAGC TCTGTGACCA TAGGCAAGTC AGTCTCCACT CTCTGGCCTT CGTTTCTGTT TATAAAAAGA 000080
000081 AAGGGAAAGA ACCAATGATT TCTAAGTCTT CTCCTGGATC TACATTTCCA GGATTCTTTA TTGCAGTGTC AACAAAGGCA 000160
000161 CCTACTCTGG GGCAGAGACT GTATTGGGGC TTTACACATA CTGCATCTAT TTTATCCTCA CATCTCCTCA GGTTAGATTT 000240
000241 TAATATTTCC AACAGTTCTA TGTTTCCTAC AAGGAAAATG CAAGGTGTTG GTGGGCCGGG GCGGGGTGTA ATCTTTCTGA 000320
000321 AGTTGTGTAG ATATAAAAGT CATCAATGGA TTTAAACCCA GGCGGCCTGA TTCTCACATC TCCCCTGGCC TCAAAATTAT 000400
000401 TTCCATATTC ATATGAAAAA CCCCAGCCAG TCACAAGAGC CCATACAGTG TCCAGTGTCT GTCACTAGCA GAAGGAATGA 000480
000481 AAGGGAATTT ATCTGCAGAA TGAGGAATTA CAACTGGAGT AAAAAGAGAA TGGTCTGAAG GTTTCTAGGC AGCAGAGTCA 000560
000561 AAACAAGGAC AGCTTCATGC TTAAAGACAC AGATGGCCAT AGCTCAAAAT GTTTGATTCT GGTCCAGGCT GGACTTGGAG 000640
000641 GCATAGATTA GAAGACCTGA AAGCCACTTT TCATGTTTGA AGAAAAGAAT AAAAGTTAGG AAATGAAGAT CTGCAGAGTG 000720
000721 AGAAGCCAGA CCATTCATGA TGGTCTTTAT CTTTGTAAAG ATTTTCTTGA TAATTTTTTT TAAAAAACCA AGTCCCTTAA 000800
000801 TTTTAGAGTA TATCTTTTAT TAAAGAAGCT GTTTCATAAC TATGTCTCAC CTACTTGCAA GAAAATTATT TCCACTAGAT 000880
000881 AGAAACATTA TTAACCACAT TATGTCTATG AGAAAACTGA GGCCAAGTGA GGAAAGATGA AATTAGAAAC ATTATCTCCT 000960
000961 GATGCCCAGA TTCATAGACT CCATACCTCA CTGATATGGC AGAGACTACT GGATGCCTAC CCAATAGCCT TGTTCCCTTA 001040
001041 ATAGAAGAGC CTAGTTTTAT TTGAAGCAGC AAAGCATCAA GCAAAAAGAT TATATTCCCA AGCCTCCCTT TCAACTAGAG 001120
001121 TTGATCATGC AACCAAGTTC TGGACAGACA GTGAGTACTT TTGTGGGAGA ATTCCATAAA GTCCTTTTAA AGCAACCTGA 001200
001201 GTTAATGAAG GTGGATCATT TGTTCCCTTC TTCTTTTTTT TCTTCCTGCT CCCTGCCGAT GAAAAACTAA AGCTCCATCC 001280
001281 ACTATCGTGG GCTAACAGTG AGCTTGAGTA CAAAGCTGTG CATTAGGATG AAGAAGATGA AATATAATGG GAGCCTGGGC 001360
001361 TCCTGAGCAT CTCAAGGCTG CCATACCAAC CCTGGCTTGC CTTCTTCTGA AATTCTCATA TATAAGAAAG AAAGAAATGA 001440
001441 TTTTTATAAA GCCACATTAT TTGCAGGGCT TCTTTTTTAT GCAGCTAAGC CTAATCCTAA AGGTTACAAT GAGATGGCTT 001520
001521 AATTTGAGAA ATGATGCAGA AAGAAGACAC TATCTGCTAT CAGACCTGGT TCCTTCCCTT GGCCCACATG GTCATAAGAA 001600
001601 GGAAGGAAGG AATAATGAAT GAAACACAGT TCATCAGATT GGAATGCCAT CAACTGCATG ACATGCTATA ATTTTATGCA 001680
001681 TCACCAACAA AGAAAAAAAT GTTGCCAATT AAACTATGAC ATGTCATTGA TTGTGAGATG CAAATCAATT TCATAAATGC 001760
001761 TAAAATGTGA GGGGAAAAAA AGCCAACCTG TGAAATATGG TGTGCTGAGG ATTTAGCAAA GCACAGTTAG GATTTAAAGT 001840
001841 TCATCAGATC AATGCATCCT CCCATCCCTA TCTTAAAGAA CAGGACACCA ACACCAAGGT CCAGCAAGGG GCAGTAATTT 001920
001921 GTCCTATAAA ATTCAGGGAT AGAGACAAGA TGAGAATCTT GACAGCAAAT TGAGAGCTCT TTAATAGGTC CCAATAGATA 002000
002001 CCAAATATTT GTTTGTGTTA CCTTGACCAC TAGCAACACG TTTATTTAAT CATCCACCTG TTCCTGTTTT TCCCTTTAAA 002080
002081 ATATGCAGTG CTGAATAGCA GAGGCAAAGG CCCTCACCCC TCCCACACAC AAATGGACTC AGCAGTCACA GGAGATGATG 002160
002161 CAGACAGATT TCCCAGTAAA TTCATGCTCA CACAGGGCAT ACACCTGAGT CAGTGGCTCT GAAGGAGATG AAGAACACCA 002240
002241 GGTGGCTATG GAGAACTGCA GGTAGGAGTC TCTGAAACAC AGGAAATTGA GATGGCATAG CAGTGGCTGA TGGCTGGGGC 002320
002321 CTGAGGAATA TTCAGCTCAA ATCTCTCCTT CCTTCTCTTA CAAGGGAAGA AACACCATGG TGAATGGCGC TTTCCCAAGG 002400
002401 GATATCCAGA ACCTAGACTC CCAGTTTATC AGAGATGGAG GGCCCAAAGA GATCATGCAT CAGTCTAGCC TGCATTAAAG 002480
002481 ATAAAAATTC TTCTAATCTC TCATAATCTG TTGTGGGTTT TAGAAAGACC ATGCTTCTGA CAGTACTGTT GATTCCGGAG 002560
002561 GCAAGGAGTG AAGTAAGAAG GACACTTCAG CCATCCAGGT AAAGAGAACA GCAGGTCCTG GACTAAAGCA GAAAAGACGG 002640
002641 AGTGAGTAGG AAAGATGGTC CAATCAAACA TCAACGAAGC TTCAAAAACA TCAAGCTTCT GAAGTCATTT TCCTGTTCTT 002720
002721 GGTACTGTTT CCTCCTCTGT TCCCAAATAT ACCCTATGCC CTCGCTCTCA ACAAAAAAAA AAA
000081 AAGGGAAAGA ACCAATGATT TCTAAGTCTT CTCCTGGATC TACATTTCCA GGATTCTTTA TTGCAGTGTC AACAAAGGCA 000160
000161 CCTACTCTGG GGCAGAGACT GTATTGGGGC TTTACACATA CTGCATCTAT TTTATCCTCA CATCTCCTCA GGTTAGATTT 000240
000241 TAATATTTCC AACAGTTCTA TGTTTCCTAC AAGGAAAATG CAAGGTGTTG GTGGGCCGGG GCGGGGTGTA ATCTTTCTGA 000320
000321 AGTTGTGTAG ATATAAAAGT CATCAATGGA TTTAAACCCA GGCGGCCTGA TTCTCACATC TCCCCTGGCC TCAAAATTAT 000400
000401 TTCCATATTC ATATGAAAAA CCCCAGCCAG TCACAAGAGC CCATACAGTG TCCAGTGTCT GTCACTAGCA GAAGGAATGA 000480
000481 AAGGGAATTT ATCTGCAGAA TGAGGAATTA CAACTGGAGT AAAAAGAGAA TGGTCTGAAG GTTTCTAGGC AGCAGAGTCA 000560
000561 AAACAAGGAC AGCTTCATGC TTAAAGACAC AGATGGCCAT AGCTCAAAAT GTTTGATTCT GGTCCAGGCT GGACTTGGAG 000640
000641 GCATAGATTA GAAGACCTGA AAGCCACTTT TCATGTTTGA AGAAAAGAAT AAAAGTTAGG AAATGAAGAT CTGCAGAGTG 000720
000721 AGAAGCCAGA CCATTCATGA TGGTCTTTAT CTTTGTAAAG ATTTTCTTGA TAATTTTTTT TAAAAAACCA AGTCCCTTAA 000800
000801 TTTTAGAGTA TATCTTTTAT TAAAGAAGCT GTTTCATAAC TATGTCTCAC CTACTTGCAA GAAAATTATT TCCACTAGAT 000880
000881 AGAAACATTA TTAACCACAT TATGTCTATG AGAAAACTGA GGCCAAGTGA GGAAAGATGA AATTAGAAAC ATTATCTCCT 000960
000961 GATGCCCAGA TTCATAGACT CCATACCTCA CTGATATGGC AGAGACTACT GGATGCCTAC CCAATAGCCT TGTTCCCTTA 001040
001041 ATAGAAGAGC CTAGTTTTAT TTGAAGCAGC AAAGCATCAA GCAAAAAGAT TATATTCCCA AGCCTCCCTT TCAACTAGAG 001120
001121 TTGATCATGC AACCAAGTTC TGGACAGACA GTGAGTACTT TTGTGGGAGA ATTCCATAAA GTCCTTTTAA AGCAACCTGA 001200
001201 GTTAATGAAG GTGGATCATT TGTTCCCTTC TTCTTTTTTT TCTTCCTGCT CCCTGCCGAT GAAAAACTAA AGCTCCATCC 001280
001281 ACTATCGTGG GCTAACAGTG AGCTTGAGTA CAAAGCTGTG CATTAGGATG AAGAAGATGA AATATAATGG GAGCCTGGGC 001360
001361 TCCTGAGCAT CTCAAGGCTG CCATACCAAC CCTGGCTTGC CTTCTTCTGA AATTCTCATA TATAAGAAAG AAAGAAATGA 001440
001441 TTTTTATAAA GCCACATTAT TTGCAGGGCT TCTTTTTTAT GCAGCTAAGC CTAATCCTAA AGGTTACAAT GAGATGGCTT 001520
001521 AATTTGAGAA ATGATGCAGA AAGAAGACAC TATCTGCTAT CAGACCTGGT TCCTTCCCTT GGCCCACATG GTCATAAGAA 001600
001601 GGAAGGAAGG AATAATGAAT GAAACACAGT TCATCAGATT GGAATGCCAT CAACTGCATG ACATGCTATA ATTTTATGCA 001680
001681 TCACCAACAA AGAAAAAAAT GTTGCCAATT AAACTATGAC ATGTCATTGA TTGTGAGATG CAAATCAATT TCATAAATGC 001760
001761 TAAAATGTGA GGGGAAAAAA AGCCAACCTG TGAAATATGG TGTGCTGAGG ATTTAGCAAA GCACAGTTAG GATTTAAAGT 001840
001841 TCATCAGATC AATGCATCCT CCCATCCCTA TCTTAAAGAA CAGGACACCA ACACCAAGGT CCAGCAAGGG GCAGTAATTT 001920
001921 GTCCTATAAA ATTCAGGGAT AGAGACAAGA TGAGAATCTT GACAGCAAAT TGAGAGCTCT TTAATAGGTC CCAATAGATA 002000
002001 CCAAATATTT GTTTGTGTTA CCTTGACCAC TAGCAACACG TTTATTTAAT CATCCACCTG TTCCTGTTTT TCCCTTTAAA 002080
002081 ATATGCAGTG CTGAATAGCA GAGGCAAAGG CCCTCACCCC TCCCACACAC AAATGGACTC AGCAGTCACA GGAGATGATG 002160
002161 CAGACAGATT TCCCAGTAAA TTCATGCTCA CACAGGGCAT ACACCTGAGT CAGTGGCTCT GAAGGAGATG AAGAACACCA 002240
002241 GGTGGCTATG GAGAACTGCA GGTAGGAGTC TCTGAAACAC AGGAAATTGA GATGGCATAG CAGTGGCTGA TGGCTGGGGC 002320
002321 CTGAGGAATA TTCAGCTCAA ATCTCTCCTT CCTTCTCTTA CAAGGGAAGA AACACCATGG TGAATGGCGC TTTCCCAAGG 002400
002401 GATATCCAGA ACCTAGACTC CCAGTTTATC AGAGATGGAG GGCCCAAAGA GATCATGCAT CAGTCTAGCC TGCATTAAAG 002480
002481 ATAAAAATTC TTCTAATCTC TCATAATCTG TTGTGGGTTT TAGAAAGACC ATGCTTCTGA CAGTACTGTT GATTCCGGAG 002560
002561 GCAAGGAGTG AAGTAAGAAG GACACTTCAG CCATCCAGGT AAAGAGAACA GCAGGTCCTG GACTAAAGCA GAAAAGACGG 002640
002641 AGTGAGTAGG AAAGATGGTC CAATCAAACA TCAACGAAGC TTCAAAAACA TCAAGCTTCT GAAGTCATTT TCCTGTTCTT 002720
002721 GGTACTGTTT CCTCCTCTGT TCCCAAATAT ACCCTATGCC CTCGCTCTCA ACAAAAAAAA AAA
Predicted Small Protein
| Name | LINC01613_smProtein_1346:1621 |
| Length | 91 |
| Molecular weight | 10689.5842 |
| Aromaticity | 0.10989010989 |
| Instability index | 50.9901098901 |
| Isoelectric point | 9.92974853516 |
| Runs | 8 |
| Runs residual | 0.0455586080586 |
| Runs probability | 0.0247195725137 |
| Amino acid sequence | MGAWAPEHLKAAIPTLACLLLKFSYIRKKEMIFIKPHYLQGFFFMQLSLILKVTMRWLNL RNDAERRHYLLSDLVPSLGPHGHKKEGRNNE |
| Secondary structure | LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHEEEELLHHHHHHHHHHHHHHHHHHHHHHHL LLHHHHHHHHHHLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
