CBR3-AS1
Revision as of 05:15, 23 June 2016 by Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== CBR3-AS1 ===Approved Name=== CBR3 antisense RNA 1 ===Previous Symbols=== _ ===Synonyms=== PlncRNA-1 ===Chromosome=== 21q22.12 =...")
Contents
Annotated Information
Approved Symbol
CBR3-AS1
Approved Name
CBR3 antisense RNA 1
Previous Symbols
_
Synonyms
PlncRNA-1
Chromosome
21q22.12
RefSeq ID
NR_038892
OMIM ID
_
Ensembl ID
ENSG00000236830
pubmed IDs
22264502, 24337686
Sequence
>gi|336455108|ref|NR_038892.1| Homo sapiens CBR3 antisense RNA 1 (CBR3-AS1), transcript variant 1, long non-coding RNA
000001 AGCCGCGGTG TGAGGGAGCG GGAGTCTTCC TTAGCTTCTC CGCCATGGGT GTCGCTTCGT AGCCGGGCTG CTCCGGGAAA 000080
000081 GGCCTCGTAC AGCACGCATT CACCAGAATC CTGTCAGCTT TCCTCTTCTC ATCCAGACGC CTGGCCAGGA TCCTCGATAA 000160
000161 GACCGTGACC CCCAACTTGG ACACCCCATA AGGGTCTTCT CTGTCGCCCA GGCTGGAGTG CAGTGCTGCA GTCGTGGCTC 000240
000241 ACTGTAGCGT CAGTCTCCTG AGCTCAGGAA AACTAGACAA TCCACCAGCC CAGGAGGGGA CAAGCAGGCT TATTCCTCCT 000320
000321 CCTCGTCATC TCTGGCTCCA GCCCCACCCT GGCCCTTGCT GGCATTCTTC CTCTTCACGT GGCTGGGGTT GGCCACCCCA 000400
000401 ATAGGGAAGC AGAGGGAGAA GTCAATGTGC TTCTGGGAAT CCAGGCGGAC AGTGAAGAAC AGGATATTTA CCACCTGCTC 000480
000481 ACGGACACGG ATATGACACT GTTGAATCAG CACATGAGCG TGGCGGATGG ACTTAGCCAA GCCAAGCTTG AAGACCTGGG 000560
000561 TCTGTAGGAA TCTCTAAGAA ATCATTGATC TTCAGGCCCA GGATGTAATC CAGCTTCATC TTGCCCTCAT CCAGCACCCC 000640
000641 AGTGCGGACC AGCCACTGCA GCAGGGCAAT GCCTTCGAAC AGACGCCGTG GGTCCTTCTC ATCAAGCGTC AGCAGCTCCC 000720
000721 GGGCGGCCTT ATGGATCTTG ACCAGGGTAA ATTTGACCCT CCAGACCTCA CATTTGTTCT GGAGCCCATA CTCACCAATC 000800
000801 AGCTTTAGCT TTTGGTCGAG ATGAGGTTTC TCGAAGGGTC TCTGCAGGGT CACATAAGTT TGGCAACAAA CCCAGCTCTG 000880
000881 GGCCGCTGGC ATGTTGGCTC CACTTGCCCG TCTATGCCTA AGCACAGGCC CTGGTCACTG AGAAAGAGCT CAAATTTTTT 000960
000961 ATATATTTCA TCTAAGGTGT TGATTCTATT GATACCCTTA TCCTTTTAAC ATGCCCTTAT CCTTTTAATG TTGGTAATGA 001040
001041 TGCTACCTGT CATTTCTGAG ACTGGTTTGT GTCTTTCGTG TTTTTTTCTG ATCTGTCTGG CTAGAGGTTT ACCAATTGAT 001120
001121 TTGATTTTCC TCAAACTTCT GGTTACAATG ATTCTCTCTC TCTCTCTTTT CCTGATTATA TTAATTTCTG TTCTGATCTT 001200
001201 TGTTTCCTTT CTTCTGCTTA CTGGATTTTA TTTGCTCTTT TTCTGGTTTC TTACTGTAAA GGCAGAAGTC ATTGATTTGC 001280
001281 ATTGATTTGA GACTTCTTTT CTAATGTAGG CAGTAAGTGG TGTAAATTCC CTTTTAGTAT GACTTTAGTG GCATCTCACA 001360
001361 TTGATATGTT TTCAATTTCA TTCAGTTTAT TTTTATTTAT TTTTTAAATT ATTTATTTAT TTATTTATTT TGAGTTGTGT 001440
001441 AGCCCTTTAT TAGCAACTAA AATAGAAGGT ATCTGTTGTA CAACATGGGT AGTAATTGAC TATAACTGGA GATTTATTAT 001520
001521 ATTCTAATAC AGATCATTTA TAAATGCAAT TTCTTTATTA AAAAGCTTCC ACCTT
000081 GGCCTCGTAC AGCACGCATT CACCAGAATC CTGTCAGCTT TCCTCTTCTC ATCCAGACGC CTGGCCAGGA TCCTCGATAA 000160
000161 GACCGTGACC CCCAACTTGG ACACCCCATA AGGGTCTTCT CTGTCGCCCA GGCTGGAGTG CAGTGCTGCA GTCGTGGCTC 000240
000241 ACTGTAGCGT CAGTCTCCTG AGCTCAGGAA AACTAGACAA TCCACCAGCC CAGGAGGGGA CAAGCAGGCT TATTCCTCCT 000320
000321 CCTCGTCATC TCTGGCTCCA GCCCCACCCT GGCCCTTGCT GGCATTCTTC CTCTTCACGT GGCTGGGGTT GGCCACCCCA 000400
000401 ATAGGGAAGC AGAGGGAGAA GTCAATGTGC TTCTGGGAAT CCAGGCGGAC AGTGAAGAAC AGGATATTTA CCACCTGCTC 000480
000481 ACGGACACGG ATATGACACT GTTGAATCAG CACATGAGCG TGGCGGATGG ACTTAGCCAA GCCAAGCTTG AAGACCTGGG 000560
000561 TCTGTAGGAA TCTCTAAGAA ATCATTGATC TTCAGGCCCA GGATGTAATC CAGCTTCATC TTGCCCTCAT CCAGCACCCC 000640
000641 AGTGCGGACC AGCCACTGCA GCAGGGCAAT GCCTTCGAAC AGACGCCGTG GGTCCTTCTC ATCAAGCGTC AGCAGCTCCC 000720
000721 GGGCGGCCTT ATGGATCTTG ACCAGGGTAA ATTTGACCCT CCAGACCTCA CATTTGTTCT GGAGCCCATA CTCACCAATC 000800
000801 AGCTTTAGCT TTTGGTCGAG ATGAGGTTTC TCGAAGGGTC TCTGCAGGGT CACATAAGTT TGGCAACAAA CCCAGCTCTG 000880
000881 GGCCGCTGGC ATGTTGGCTC CACTTGCCCG TCTATGCCTA AGCACAGGCC CTGGTCACTG AGAAAGAGCT CAAATTTTTT 000960
000961 ATATATTTCA TCTAAGGTGT TGATTCTATT GATACCCTTA TCCTTTTAAC ATGCCCTTAT CCTTTTAATG TTGGTAATGA 001040
001041 TGCTACCTGT CATTTCTGAG ACTGGTTTGT GTCTTTCGTG TTTTTTTCTG ATCTGTCTGG CTAGAGGTTT ACCAATTGAT 001120
001121 TTGATTTTCC TCAAACTTCT GGTTACAATG ATTCTCTCTC TCTCTCTTTT CCTGATTATA TTAATTTCTG TTCTGATCTT 001200
001201 TGTTTCCTTT CTTCTGCTTA CTGGATTTTA TTTGCTCTTT TTCTGGTTTC TTACTGTAAA GGCAGAAGTC ATTGATTTGC 001280
001281 ATTGATTTGA GACTTCTTTT CTAATGTAGG CAGTAAGTGG TGTAAATTCC CTTTTAGTAT GACTTTAGTG GCATCTCACA 001360
001361 TTGATATGTT TTCAATTTCA TTCAGTTTAT TTTTATTTAT TTTTTAAATT ATTTATTTAT TTATTTATTT TGAGTTGTGT 001440
001441 AGCCCTTTAT TAGCAACTAA AATAGAAGGT ATCTGTTGTA CAACATGGGT AGTAATTGAC TATAACTGGA GATTTATTAT 001520
001521 ATTCTAATAC AGATCATTTA TAAATGCAAT TTCTTTATTA AAAAGCTTCC ACCTT
Predicted Small Protein
| Name | CBR3-AS1_smProtein_668:823 |
| Length | 51 |
| Molecular weight | 5893.6091 |
| Aromaticity | 0.156862745098 |
| Instability index | 97.6960784314 |
| Isoelectric point | 12.3026733398 |
| Runs | 7 |
| Runs residual | 0.0169869928169 |
| Runs probability | 0.0433795139678 |
| Amino acid sequence | MPSNRRRGSFSSSVSSSRAALWILTRVNLTLQTSHLFWSPYSPISFSFWSR |
| Secondary structure | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLLLEEEELLLLLLEEEEEEL |
| PRMN | - |
| PiMo | - |
