LINC00893
Revision as of 05:35, 23 June 2016 by Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== LINC00893 ===Approved Name=== long intergenic non-protein coding RNA 893 ===Previous Symbols=== _ ===Synonyms=== _ ===Chromosom...")
Contents
Annotated Information
Approved Symbol
LINC00893
Approved Name
long intergenic non-protein coding RNA 893
Previous Symbols
_
Synonyms
_
Chromosome
Xq28
RefSeq ID
NR_027455
OMIM ID
_
Ensembl ID
ENSG00000241769
pubmed IDs
10737977
Sequence
>gi|611435044|ref|NR_027455.5| Homo sapiens long intergenic non-protein coding RNA 893 (LINC00893), long non-coding RNA
000001 GCTGCGGGAA ATTGCTGGAG AAGGGGGAGC CAAGCTGGAG TAAGGCTGGC GGTCTCCCGC ATTGACTTCA TAACCAAGTT 000080
000081 CTGGGTCCCT GCCTCTGGAG TGCCTGATGA GACAAAACGG CTCCTCGTCC TGCATCCCCG CTGCTACTTC CAGAATTCAG 000160
000161 GCCTCGTGGT CTGGAGCCTG CACTGTTCCA TGAGCCTCCT GAGCAACCTG GAGTCCTCTG TCTTTCTTCC CTCAGTGAGA 000240
000241 TGCGCCTACT TCTCCCTGGA GAAGCTCGAG GAAGCAGGAA TGCTGGAGAT GAGCTGCTCC TCACTCTCAC TCCTGGGTGT 000320
000321 GCTGGGCAGT GGGGTGCAAT GTGCACGTAG GTGCACACTC TCCCTGGGCG GCAGCGAGAA GCAGAGGTCT GATCTGTGGT 000400
000401 CGGATGAGGA GAGGAAGTGC AAGTAAAGCA GCTGCAGCGA GACCTCGTCT GCTCAGGGGC TTGTTCTTAC ATCTTTTGCA 000480
000481 GGGCTGTTTT GAAGTCAGTA TTCACTTAAG CACTCCAAAT TACCCAGCAC ACCCTGCCTG CATGGCGCTG CGCTGCACCT 000560
000561 TCACTCTGGT CACGGGTCTG GCAGTCGGCT CACCAATTCG TCCTGCTTCC CTGGGACTCG CCGGCTTTTA GCACTGCAAT 000640
000641 TCACTCAGCA AACTGGGACT GTTGGTCACC CTACCTGGCA GCCAGTGATA AGGTGAGGGC CACTCCTGGG AGGGAGGACA 000720
000721 CCTGTGGGGA AAATTCTTGT GTTATTTATT TCTCCTTCGG GATAGGGTGC CTGCAGCGCT TCATGGGAGG GGGTGGGCTG 000800
000801 ATGCTGCGGG CTCAGAAGTT TCAAGGGCAT CTGGGGAGAC CAGATATTCA GAGACCTTCT CCTAGATGTG CCTGTTCCAT 000880
000881 GTATCAGGGA CACAGGTTTT CCCAACAGGG CTGGTGTCAT TGGCATGACA GACCTGCCTT GGCTGAGCGT TCACCCGTCT 000960
000961 TCGGAGTTCA GCCACCTTAG CAAGTCCTGG GTTTGTTCTT CAGATTTTGC TGCTCGCCCA TTGCCTGGAT CGGGGGCTAC 001040
001041 TTTGTAAACC ACCAGGAAGA CTCCAGTGTT TCTGCTTAAT TTTTAGATGT TTGTTAATTG CTCTTGGCCT CTCATTAATC 001120
001121 CCCTGTGGGT CATCCAGGAA ATATACTCAC CACTGTCTGT TCTCTGAGTT TTCATTTCCA GGCATCCGCC CTGCCTGGAT 001200
001201 CTCCTCACCT GCCAGGAACT TCCTCTCCAC AAGCCGGCCA TCCCAGCAAA AGTTCTAACA CCAAAGATGA CTGCCAGGGG 001280
001281 CATGAAGGGG ATGTGCTTCC AGGGCATTTG CTGGCAGGGC GTCTCGTGAT CTCTTGGTAT TGGTGTGAGC ACAGCCTGGC 001360
001361 AGGAGAGGGC AGATCTCCAT GCAAAGTATG TCAGAAAGCA GATGGAAGCC AGGCCCCCTC CTGAAAGAGG CTCCTTGAAG 001440
001441 ATAATTCTAA CATCTTTGTC ATCAGTGTTG ACATCTCTTG ATTGTATCCT GTCATTCCAT TTGAGATCTT CCTGGTTCTG 001520
001521 GCTGGCATCC TCTGACATCA CTCCAGCAGA AGAAAGGGAA GGAACACGCT GCATTACTGC GTGGTCACAA GGTCCCCGTC 001600
001601 TGATCTGCCT TCACTCCACC TTTCAGAGTC TTATGTTTGT TTTGTGTATA TTATCAAGGG GTTTTAGGTC ACTTAGTCGG 001680
001681 AAGAATAGGG AAAAGTATGT CTACTCCAGC TTAATGGAAG TGGAATTCTC CTGAGAACCT TTTTTTGATA CAAAATATGT 001760
001761 ACTTGTGCAT ATTTTGTATC AAAATATATA ATGTACATGT CCCTTTTGTA CATGTATATA AATTGTATAT AAATATTTAG 001840
001841 GGTTATAAAA ATAACCAAAG ACACCAAAAA CTGCCACAGG TGGATTTGAG AAGATGTGGA AATGCCTCAC TGCTAAGACA 001920
001921 TGCTCATTCT TGACAGGCTG GGAACCCTGA ATGCTGTAGT GTCACCACTG CCCTGTCCTG TACCTACCTA TCTTTTCACT 002000
002001 CATTTCCTCC AAGCTCAGGT TTTCAGTTTG GGGTATGTGC CACCTAACAG TGAGCTGTGG AACTGCAGCA CAATCATCAA 002080
002081 ATTCAAAAAA GGCAAGGACA TCTTGCTCAG TTTTTAAGAT ACGCCATAGA TGGAGTAAAC CATAACCTTT GATTCCAGAT 002160
002161 CCTTAACCCT GATTAAAAAC AACACAACCC TTCATGTTGA TTTAAAACAT CCCTTGCAAA AGATGGTTTG AATATTCCAA 002240
002241 GTTGGAAATA CCCAGTCTTT TAAAGTTACA GCACCCTTTT TGATACAAAA AATGTGCATG ACAGAAATTG TACAGTGAGT 002320
002321 AGTGTTATAA AAATAACCAA ACACACCAAA AAAAAAAAAA AAAAAAA
000081 CTGGGTCCCT GCCTCTGGAG TGCCTGATGA GACAAAACGG CTCCTCGTCC TGCATCCCCG CTGCTACTTC CAGAATTCAG 000160
000161 GCCTCGTGGT CTGGAGCCTG CACTGTTCCA TGAGCCTCCT GAGCAACCTG GAGTCCTCTG TCTTTCTTCC CTCAGTGAGA 000240
000241 TGCGCCTACT TCTCCCTGGA GAAGCTCGAG GAAGCAGGAA TGCTGGAGAT GAGCTGCTCC TCACTCTCAC TCCTGGGTGT 000320
000321 GCTGGGCAGT GGGGTGCAAT GTGCACGTAG GTGCACACTC TCCCTGGGCG GCAGCGAGAA GCAGAGGTCT GATCTGTGGT 000400
000401 CGGATGAGGA GAGGAAGTGC AAGTAAAGCA GCTGCAGCGA GACCTCGTCT GCTCAGGGGC TTGTTCTTAC ATCTTTTGCA 000480
000481 GGGCTGTTTT GAAGTCAGTA TTCACTTAAG CACTCCAAAT TACCCAGCAC ACCCTGCCTG CATGGCGCTG CGCTGCACCT 000560
000561 TCACTCTGGT CACGGGTCTG GCAGTCGGCT CACCAATTCG TCCTGCTTCC CTGGGACTCG CCGGCTTTTA GCACTGCAAT 000640
000641 TCACTCAGCA AACTGGGACT GTTGGTCACC CTACCTGGCA GCCAGTGATA AGGTGAGGGC CACTCCTGGG AGGGAGGACA 000720
000721 CCTGTGGGGA AAATTCTTGT GTTATTTATT TCTCCTTCGG GATAGGGTGC CTGCAGCGCT TCATGGGAGG GGGTGGGCTG 000800
000801 ATGCTGCGGG CTCAGAAGTT TCAAGGGCAT CTGGGGAGAC CAGATATTCA GAGACCTTCT CCTAGATGTG CCTGTTCCAT 000880
000881 GTATCAGGGA CACAGGTTTT CCCAACAGGG CTGGTGTCAT TGGCATGACA GACCTGCCTT GGCTGAGCGT TCACCCGTCT 000960
000961 TCGGAGTTCA GCCACCTTAG CAAGTCCTGG GTTTGTTCTT CAGATTTTGC TGCTCGCCCA TTGCCTGGAT CGGGGGCTAC 001040
001041 TTTGTAAACC ACCAGGAAGA CTCCAGTGTT TCTGCTTAAT TTTTAGATGT TTGTTAATTG CTCTTGGCCT CTCATTAATC 001120
001121 CCCTGTGGGT CATCCAGGAA ATATACTCAC CACTGTCTGT TCTCTGAGTT TTCATTTCCA GGCATCCGCC CTGCCTGGAT 001200
001201 CTCCTCACCT GCCAGGAACT TCCTCTCCAC AAGCCGGCCA TCCCAGCAAA AGTTCTAACA CCAAAGATGA CTGCCAGGGG 001280
001281 CATGAAGGGG ATGTGCTTCC AGGGCATTTG CTGGCAGGGC GTCTCGTGAT CTCTTGGTAT TGGTGTGAGC ACAGCCTGGC 001360
001361 AGGAGAGGGC AGATCTCCAT GCAAAGTATG TCAGAAAGCA GATGGAAGCC AGGCCCCCTC CTGAAAGAGG CTCCTTGAAG 001440
001441 ATAATTCTAA CATCTTTGTC ATCAGTGTTG ACATCTCTTG ATTGTATCCT GTCATTCCAT TTGAGATCTT CCTGGTTCTG 001520
001521 GCTGGCATCC TCTGACATCA CTCCAGCAGA AGAAAGGGAA GGAACACGCT GCATTACTGC GTGGTCACAA GGTCCCCGTC 001600
001601 TGATCTGCCT TCACTCCACC TTTCAGAGTC TTATGTTTGT TTTGTGTATA TTATCAAGGG GTTTTAGGTC ACTTAGTCGG 001680
001681 AAGAATAGGG AAAAGTATGT CTACTCCAGC TTAATGGAAG TGGAATTCTC CTGAGAACCT TTTTTTGATA CAAAATATGT 001760
001761 ACTTGTGCAT ATTTTGTATC AAAATATATA ATGTACATGT CCCTTTTGTA CATGTATATA AATTGTATAT AAATATTTAG 001840
001841 GGTTATAAAA ATAACCAAAG ACACCAAAAA CTGCCACAGG TGGATTTGAG AAGATGTGGA AATGCCTCAC TGCTAAGACA 001920
001921 TGCTCATTCT TGACAGGCTG GGAACCCTGA ATGCTGTAGT GTCACCACTG CCCTGTCCTG TACCTACCTA TCTTTTCACT 002000
002001 CATTTCCTCC AAGCTCAGGT TTTCAGTTTG GGGTATGTGC CACCTAACAG TGAGCTGTGG AACTGCAGCA CAATCATCAA 002080
002081 ATTCAAAAAA GGCAAGGACA TCTTGCTCAG TTTTTAAGAT ACGCCATAGA TGGAGTAAAC CATAACCTTT GATTCCAGAT 002160
002161 CCTTAACCCT GATTAAAAAC AACACAACCC TTCATGTTGA TTTAAAACAT CCCTTGCAAA AGATGGTTTG AATATTCCAA 002240
002241 GTTGGAAATA CCCAGTCTTT TAAAGTTACA GCACCCTTTT TGATACAAAA AATGTGCATG ACAGAAATTG TACAGTGAGT 002320
002321 AGTGTTATAA AAATAACCAA ACACACCAAA AAAAAAAAAA AAAAAAA
Predicted Small Protein
| Name | LINC00893_smProtein_782:979 |
| Length | 65 |
| Molecular weight | 7314.3079 |
| Aromaticity | 0.0923076923077 |
| Instability index | 85.4523076923 |
| Isoelectric point | 10.1112670898 |
| Runs | 9 |
| Runs residual | 0.0118269230769 |
| Runs probability | 0.0280182142927 |
| Amino acid sequence | MGGGGLMLRAQKFQGHLGRPDIQRPSPRCACSMYQGHRFSQQGWCHWHDRPALAERSPVF GVQPP |
| Secondary structure | LLLLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLEELLLLEEEELLLLHHHLLLLLL LLLLL |
| PRMN | - |
| PiMo | - |
