LINC00994
Revision as of 12:29, 23 June 2016 by Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== LINC00994 ===Approved Name=== long intergenic non-protein coding RNA 994 ===Previous Symbols=== _ ===Synonyms=== _ ===Chromosom...")
Contents
Annotated Information
Approved Symbol
LINC00994
Approved Name
long intergenic non-protein coding RNA 994
Previous Symbols
_
Synonyms
_
Chromosome
3p14.1
RefSeq ID
NR_033978
OMIM ID
_
Ensembl ID
ENSG00000189196
pubmed IDs
26278503
Sequence
>gi|300116226|ref|NR_033978.1| Homo sapiens long intergenic non-protein coding RNA 994 (LINC00994), long non-coding RNA
000001 AAGTACTGCA TTCAAAGAAA TACAAACACA ACCAGAAAGT ATTATAAGTC TATATTCAGC ATTTCAAATC TGTCCTGTCT 000080
000081 ATCAAGGAAA CACCGAAGGA GGAGGTAAAT TCTTAATGCA TAGCAGACAT TTAAAAATTC TCTCTCACCA TTGCTGCCCA 000160
000161 GTCACTACCC TGCATGTGAA TGCCAGCTTG TCTCTTGAGT TGTCTCTTTC CTATTCTCAA CTTCCACCCC CAAACACATT 000240
000241 TAGAGCACAG GTCTTTTCTG TCACACTTGC CAGTCTTCCT TGCCTGCTCT TATTATGTAA ATCAAATTCA CCACTCTGTC 000320
000321 CTGTTTTGTT TTCATCTCTG CTTCACTCAA TACCCCGACT CCCTCAGGAC CGTGTTGCTT CTGCCCTGAA TGAGTTCTTT 000400
000401 TCTCCCGGGC TGCAGGGACC ACAGAGGTCT TCTTCCTATT ACTTCATGGA CTGTATGAAT TCCACCCAGC TGGTGACATC 000480
000481 ATGGCAGGTG GTTTGGAGAT GAACTGGTAT CCTGCCCTGT GTTAAATGTC CTCAGACTGG AGCTCAGAAC TTTTGAGTAT 000560
000561 TTTCAAAAGG GTCACCGTGT CTCCAGAGAA ATGCTCCCAA CAGTCCTAAC TGAAGTCAGC ACTGAACTGG GCAAAGGACT 000640
000641 CAAGAAAAAA AGTTTCCTTC CTCCTCGATG TGTTGCTCAA AGCACTGCGT GAGACCACAC GGAGCAGTAT CTAAGCATTG 000720
000721 AGCAACACTC AGAAGGGCAG CAGGACAAAT GCGTAGCTGC TAATGACCCC TCTCCTGCCA ATGCTTTCCT CCCTCAGCCC 000800
000801 CCTCTAGGGT CACCGAACAG CTGTAAATAC AAGCTGACCA CCCTCAAGGA GCTGGGATGG AGGGAGGTTT TCTCCAGTCT 000880
000881 CCAGTTCTGC CTTTGCACCT CTGTGGCCTC TCAAATGCTC AGCCAGTATT TTGAGTACAC CCAACCTCAC CCAGGAGATA 000960
000961 TATGTCACCC AGAAACATGT GCTCTCCAGA AAGTCTTCCT GACATCATCG GGGCAGTCCT CCTCCACCTC CTCCTCTTCC 001040
001041 CAGCAATTCG TTCTGCAAAT TAATGCCATC CAAACAATCC TCGAGAACTA TCTAGGAAAG GACGAGGACC AAATTACCAA 001120
001121 GCCTTTGGAT CTAATCCATG TGGCATCCCA TCTGTGAGCT CCAGGGAGAT TCAAAGTTGG CCAGTGCTGG AGGCCAATCA 001200
001201 TATTTATACC ATTTCCATAT GGCACCTTTT GATTGAGACT TGGCAAGCAC ATGATCGGAT TGGAGGAAGA CAGAGAGCAA 001280
001281 GACGTTGGAA CAAGCAGCAG GGGTGGAGCC TGGGACACAA GGTCAGCACA TAGCAAGCCC TTGCTTTGGA GCAGAGGTGG 001360
001361 CCGGTTTCCA GGGCAGTGAG TATTTGAGGC AGTAATTGTG ATCTTCAGCT TCACTGGTGC AAGTATCACC TGTGAGAAAG 001440
001441 CAGGCATTGG GTGTGATTAA TTAGTATGCT TCTTTAGCAT ATGGGGTGAG GGAGGGACAG GGGCTAATTT GAGCAGTCAG 001520
001521 GGACAAGGAG TCAACATCAG TGTGGAGTGA TAACGTTTGT ACACCAAGCT GGTAAATAGA CATCCTAGTT ACATATGATT 001600
001601 CTATTGGCAT TGCCTACAGA GGAGAAAAAA GTGATCAAGT GGTTGTGGAT TTTATGTTTG CTTACCTGTT TTTTAAAAAA 001680
001681 AAGGTGAATA AGGAACTTTA TAAAGATGTT GGATTCCAGC ATGTTAGACA TTGTAGTGGA TTGAATTTTG ATCCCCAAAA 001760
001761 AGATATGTCC CAAGTCTTAA CCTCACAGTA GCTGTCAATG TGAGCTTATA TAGAGCCTTT GCAAATGTAT TAAGTTAAGC 001840
001841 ATCTCCAGAC GAGATCATCC TGGATTCAGT GTGGGCTCTA AATTCAATGA CTGGTGGTGG TATAAGAGAA AGGAGAGAGA 001920
001921 GACAAACAGA CCCAGAGACA CACAGAGGGG AAGGCCATCA GAAGACGAGG CAGCTATTGG AGTTACGCAG CCAGAGCCAA 002000
002001 GGGATGCCAG AAGCCAACAG AAGCTGGAGG AGTCAAGGAA GGATTCTCCC CTAGAACCCT GGAAGGGACT GTGGCCCTGC 002080
002081 TGACGCTTTC TGGGCTCCAA AACTGAGTGA GAATAAATTT CTGTTGTTT
000081 ATCAAGGAAA CACCGAAGGA GGAGGTAAAT TCTTAATGCA TAGCAGACAT TTAAAAATTC TCTCTCACCA TTGCTGCCCA 000160
000161 GTCACTACCC TGCATGTGAA TGCCAGCTTG TCTCTTGAGT TGTCTCTTTC CTATTCTCAA CTTCCACCCC CAAACACATT 000240
000241 TAGAGCACAG GTCTTTTCTG TCACACTTGC CAGTCTTCCT TGCCTGCTCT TATTATGTAA ATCAAATTCA CCACTCTGTC 000320
000321 CTGTTTTGTT TTCATCTCTG CTTCACTCAA TACCCCGACT CCCTCAGGAC CGTGTTGCTT CTGCCCTGAA TGAGTTCTTT 000400
000401 TCTCCCGGGC TGCAGGGACC ACAGAGGTCT TCTTCCTATT ACTTCATGGA CTGTATGAAT TCCACCCAGC TGGTGACATC 000480
000481 ATGGCAGGTG GTTTGGAGAT GAACTGGTAT CCTGCCCTGT GTTAAATGTC CTCAGACTGG AGCTCAGAAC TTTTGAGTAT 000560
000561 TTTCAAAAGG GTCACCGTGT CTCCAGAGAA ATGCTCCCAA CAGTCCTAAC TGAAGTCAGC ACTGAACTGG GCAAAGGACT 000640
000641 CAAGAAAAAA AGTTTCCTTC CTCCTCGATG TGTTGCTCAA AGCACTGCGT GAGACCACAC GGAGCAGTAT CTAAGCATTG 000720
000721 AGCAACACTC AGAAGGGCAG CAGGACAAAT GCGTAGCTGC TAATGACCCC TCTCCTGCCA ATGCTTTCCT CCCTCAGCCC 000800
000801 CCTCTAGGGT CACCGAACAG CTGTAAATAC AAGCTGACCA CCCTCAAGGA GCTGGGATGG AGGGAGGTTT TCTCCAGTCT 000880
000881 CCAGTTCTGC CTTTGCACCT CTGTGGCCTC TCAAATGCTC AGCCAGTATT TTGAGTACAC CCAACCTCAC CCAGGAGATA 000960
000961 TATGTCACCC AGAAACATGT GCTCTCCAGA AAGTCTTCCT GACATCATCG GGGCAGTCCT CCTCCACCTC CTCCTCTTCC 001040
001041 CAGCAATTCG TTCTGCAAAT TAATGCCATC CAAACAATCC TCGAGAACTA TCTAGGAAAG GACGAGGACC AAATTACCAA 001120
001121 GCCTTTGGAT CTAATCCATG TGGCATCCCA TCTGTGAGCT CCAGGGAGAT TCAAAGTTGG CCAGTGCTGG AGGCCAATCA 001200
001201 TATTTATACC ATTTCCATAT GGCACCTTTT GATTGAGACT TGGCAAGCAC ATGATCGGAT TGGAGGAAGA CAGAGAGCAA 001280
001281 GACGTTGGAA CAAGCAGCAG GGGTGGAGCC TGGGACACAA GGTCAGCACA TAGCAAGCCC TTGCTTTGGA GCAGAGGTGG 001360
001361 CCGGTTTCCA GGGCAGTGAG TATTTGAGGC AGTAATTGTG ATCTTCAGCT TCACTGGTGC AAGTATCACC TGTGAGAAAG 001440
001441 CAGGCATTGG GTGTGATTAA TTAGTATGCT TCTTTAGCAT ATGGGGTGAG GGAGGGACAG GGGCTAATTT GAGCAGTCAG 001520
001521 GGACAAGGAG TCAACATCAG TGTGGAGTGA TAACGTTTGT ACACCAAGCT GGTAAATAGA CATCCTAGTT ACATATGATT 001600
001601 CTATTGGCAT TGCCTACAGA GGAGAAAAAA GTGATCAAGT GGTTGTGGAT TTTATGTTTG CTTACCTGTT TTTTAAAAAA 001680
001681 AAGGTGAATA AGGAACTTTA TAAAGATGTT GGATTCCAGC ATGTTAGACA TTGTAGTGGA TTGAATTTTG ATCCCCAAAA 001760
001761 AGATATGTCC CAAGTCTTAA CCTCACAGTA GCTGTCAATG TGAGCTTATA TAGAGCCTTT GCAAATGTAT TAAGTTAAGC 001840
001841 ATCTCCAGAC GAGATCATCC TGGATTCAGT GTGGGCTCTA AATTCAATGA CTGGTGGTGG TATAAGAGAA AGGAGAGAGA 001920
001921 GACAAACAGA CCCAGAGACA CACAGAGGGG AAGGCCATCA GAAGACGAGG CAGCTATTGG AGTTACGCAG CCAGAGCCAA 002000
002001 GGGATGCCAG AAGCCAACAG AAGCTGGAGG AGTCAAGGAA GGATTCTCCC CTAGAACCCT GGAAGGGACT GTGGCCCTGC 002080
002081 TGACGCTTTC TGGGCTCCAA AACTGAGTGA GAATAAATTT CTGTTGTTT
Predicted Small Protein
| Name | LINC00994_smProtein_914:1156 |
| Length | 80 |
| Molecular weight | 8909.8649 |
| Aromaticity | 0.075 |
| Instability index | 52.52375 |
| Isoelectric point | 4.97833251953 |
| Runs | 11 |
| Runs residual | 0.00131578947368 |
| Runs probability | 0.0399222752164 |
| Amino acid sequence | MLSQYFEYTQPHPGDICHPETCALQKVFLTSSGQSSSTSSSSQQFVLQINAIQTILENYL GKDEDQITKPLDLIHVASHL |
| Secondary structure | LLLLEEEELLLLLLLLLLHHHHHHLEEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHHHL LLLHHHHLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
