PSMD5-AS1
Revision as of 13:54, 23 June 2016 by Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== PSMD5-AS1 ===Approved Name=== PSMD5 antisense RNA 1 (head to head) ===Previous Symbols=== _ ===Synonyms=== _ ===Chromosome=== 9...")
Contents
Annotated Information
Approved Symbol
PSMD5-AS1
Approved Name
PSMD5 antisense RNA 1 (head to head)
Previous Symbols
_
Synonyms
_
Chromosome
9q33.2
RefSeq ID
NR_024408
OMIM ID
_
Ensembl ID
ENSG00000226752
pubmed IDs
12477932
Sequence
>gi|212276166|ref|NR_024408.1| Homo sapiens PSMD5 antisense RNA 1 (head to head) (PSMD5-AS1), long non-coding RNA
000001 GTTAGGGCCG TGTCAACTGT AGCCAGTGGT TGCGGCTCCC TCAGTCTGGC GTCATCTAGG TCGCTGCTCA GGGAAATGCG 000080
000081 GAGGCCAGTA GGCTTACGTG TTTACCGCGT AGGGCAAAGC CTTGCCAAAT TCCCGGCCAG CGGAGCGGCG AGGGTGGGGA 000160
000161 CTCACGGGAA GTTAAACAGC CTCGTCGGCG TCCTCGAGGC TCCAAAACCA GGCTCTAGGC GGGGACGACT GCAGCCGTTA 000240
000241 TGGAGGCCAC CGCGGCTACG GCCGCGGCTG AGGCCTCCCC AGGTGGAGCG GTGGCCTGGA GGGGAATCTT GATCCTGGGC 000320
000321 CAGCCACCTG TCAAGAGGAG GCGGAGCGTC ATGCCTCTGG AAGACTGGAT GAATATTCTC CAGGAGCCTG ACGAAGGCGA 000400
000401 AGAAGTCTTT GCAGAGGAAA TTGAATGCTG TCTGATGCTA CAATTCATAT GGATCCTTTC CTGGATTGAA GCCTGACTTT 000480
000481 TAAAAAAGGT TTCAATAAAT TGCTTATACC TATGAAGAGA TGCAAAAGAA CCTTCAAAAT AAAGCAAAGG ACTTGAAGAA 000560
000561 AGAGAAGGAA GACATGAAGA AGAGGATGTC ATTTAGGTGA AGGGCCATGC TGGATAAGGA GCTGGCTGCC TCTGTGAACA 000640
000641 TCCTACTCAA GGCATCTTCA CTGCTGTACA TCCTTTTGAA ATCCCAGAGA TCTTCAGTCT CCCTGTGGAT TAAGGAGATG 000720
000721 TGCAGTATTT AAAGTGGCTT CAGGAAGGCA TGGAAGAGGA CTGAGTGGGG AAAGCTTTTT GTGCATGCTG CTGGCTACCT 000800
000801 CCAGCGGCTG CCTCCAGCCT CCATCAGCTG CACTCTGGGG AAGAGGAGGC TGCCTTCTAC CTCCCAGCAT CTCTGGATTT 000880
000881 CATGTTCCTG TCAGCACAGA GGAGCTAAAT GGCCTGTAGA GGCTGAAGGT CTGAGGCTCC TAAAGCTGGA AGAAAAGGCT 000960
000961 GGGCCAGTCA GGCCAAGCAA GAACACAGTG TAACTTGTCT CTGAGTGCTT CATGGTTAAG GGGGCTAAGC AGGCACAAGG 001040
001041 GCATGAGGAT GGTTATATGT ACAGACTGAG GGGAAGAAGC AGTGAAGATG AGACTTGCCA TCTTCTTGAG TCAGTAGGCC 001120
001121 TGCCTCAGGT GCCTAGGATG TAATTGCTCT GCTGCTTCTC ATGGGGAGGA GTGGCCCTCA TGACCTTGTT TACCTGGAAG 001200
001201 AGTGTGGGAT GAATGCCTCC TCCTATGGGG ACTCGCAAGT GCTTTAGCAA AAGGATAAAT TGCTAATTGT GGCATTTCGT 001280
001281 GGATCAGCAG GATTATTTCT CCTTGCTAAA GAGGATTTTG TTGGTCCTGA ATTCTGAGGA GGTGGGACTA GGAATGGGCT 001360
001361 CCATGAGCCT GTGTATGACT CAGGGAATAT TAGGACTTTG GCACAGCCTC ATGGGTTGGG AGTAAGTCTT GGCTCTTCCC 001440
001441 TAGCCTGAAT GACAGACATC AGATCATTCT GGTGCTTTGT CCATGAAGAT GTAGATTCTG AGCCCACCCA ACTAATCTTT 001520
001521 TCACTTGAGC ACAGAAACAG CCCCGGGAAT CGGACAGACC CGTGTCTTTC AGGTTTGCTT CACAGAGCCC CAGGGGTTGA 001600
001601 CAATAGGTGC CTTGGAGACT GCCTGCATGG GGATTTTTAA AAAGCTTTCT TTGTTAAAGG TTTGTAAACC ACTCCTCTGA 001680
001681 GCCTGTTTTC ATTTTATAGA TTATTCAGGG AACTGAACTG CACAGAGATC CAGAAAGTGG GTAGTGCAGG CTGTAGTGCT 001760
001761 GATAACTACT GTACTACTTG GATCTTTGTG CTCCCAAATA CCAAATGGAA GAGGATCTCT GAGAGTCCTT TGCAAAGATC 001840
001841 TTGTAGGGAC TTTAGGCTGG GGCCTTCGGA AAATTCCAGA GGATTCCAAT GGAGATTTTG AGGGACTGAC TCAGAAGAAC 001920
001921 AAAGAGAATG ATAATGGTGA TGTCCCTGCT TTTTACAACA GATCATGTTC TGATATATAT GCAAATCTGT GTAAAGTAAA 002000
002001 CCCTACCTAA AATGTACTGG GGACCCAAGA TGGACTGCCT GTATTGCTTC CAGGATAAAG TCCAATTTCT AGCTCTGGTT 002080
002081 TTTATAACCT TGCTTCAGCT CACCTTTTCC GTCATCATCC CCTCCATCTC CTCTCCCACG CTGGGAAATG GATGGCTGCA 002160
002161 CTATACTGTG TGATGTTATT GCTATGTTCA TGCCATCCCC TCTGCCTGGA ATGCCCTTCT GCATGAATGC CTGTGAAATG 002240
002241 TTGTTGCTCC TTTGTATGGC CTGGCTTCCG TGGTTGGCAG GAATCTCTTC TTTCGTGGTA TTCCTGTCAT CTTTGTGCAT 002320
002321 CACAGTCAGC TTTGTATTCC TAGCTTGTAA GCTACTTGAG GATAGGGGCA TGTCTGAATC TATTTAATCT CTTGCACCTG 002400
002401 TTTGGCAAAT TGATGTTTTA AGTATTTAAA TAACTAAAGC TCTCTCTACA GTACATACTC ACTTTTGATT TATGAATTGG 002480
002481 CAAAATTCAA CTTTTTTCCT TGAATATTCT TAAAGTGAGA TGAATTCCAA AGGAGAGTGT TCTGTGTGTG GCCTTCATTG 002560
002561 AGTGGTTTTC TGTTACCAGA AAGCTCTTGG TGGCCTTCCT CTTCCCTGGT GTCAAGGTTG ACTGTTATAG GAAATGGGAG 002640
002641 GGGAGAGGGC CGTTTCTGCC ACGCATTGTC CTAGGTTCTT AACATTATTT AATCCTTATA ATGCAATGTT ATCCTCATTT 002720
002721 TACAGATGAA ACCTGAGACC AAAGAACATG TAACACATAA AGTACATTGC AGAGTTAGGA TGTGAACCCA ACTCTGATTC 002800
002801 TAAACCTAAT GCTCTCACTC TTTCATTCAG AGGTTCAGTC AGTTCTTTGT AGGCTGTAGA TCCAGAGAAG CTGCCGTAGC 002880
002881 CAACAATGAA GTTGTTAGTT TTTAAAACAT CTATGTGGTA AGTTGGTCTG GCACTTAAAA ATGTATTGTT TCCCAGGCAC 002960
002961 GGTGGTTCAC ACCTGTAATC CCAGCATTTT GGGAGGCCGA GGCAGGCGGA TCATTAGGTC AAAAGATTGA GACCATCCTG 003040
003041 ACCAACATGG TGAAACCCCG TCTCTACTAA AAGTACAAAA ATTAGCTGGG TGTGGTGGCG CATGCCTCTA GTCCCAGCTA 003120
003121 CCTGGGAGGC TGAGGCAGGA GAATTGCTTG AACCCAGGAG GCAGAGGTTG CAGTGAGCCA AGATCATGCT ACTGCACTAC 003200
003201 AGCCTGGCAA CAAAGCGAGA CTCTGTCTAA AATATATATA TATATATATA TTGTTTACTA CTCACCACAG ATCTGCAGGA 003280
003281 GTTCACTGAT CTCTAGGATC TGCCTTAACT CCAACTTACA TGTTTTGGTC ACTATTACAA ACTGTCATCC CAGAATGATG 003360
003361 CTGCAGAGGC TAGGGCTAGG ACACAGACCA GTGTTTCCAT GTGGGAATTC CCTCCCAGTA TTTCTTAGGA AATGTATGTT 003440
003441 TTTTGAATCC ATAATCCCTA GAAAAATCAG TTGAGGAAAT GAGAAGTATT GTAATTATTC TGTGAATAGT AACACTTACC 003520
003521 ATTATGGAGA CATCACTAGT TTGAAAGAAT CCAACTTCAT CAAATATTAA CGTACCGAGT TGAAGGCTAC AAGAACTGAG 003600
003601 ACAGGAGCAT AGCAGAGAGA AACGGTCACC ATCTCATTAG CCCTATTTTT GGTTGTTGTG ATGCCATTAC ATCTGTATAT 003680
003681 CTGGCCATAT CAGCTGCTAA TGGTGAGTTC TTGCAAACAA AATGATTTGA TAAACAACCT ACCATACTTT ATACAAATCT 003760
003761 TATGGTGTTC CGAGAAATAA ACTTTGGAAG CAAAATAAAA AAAAAA
000081 GAGGCCAGTA GGCTTACGTG TTTACCGCGT AGGGCAAAGC CTTGCCAAAT TCCCGGCCAG CGGAGCGGCG AGGGTGGGGA 000160
000161 CTCACGGGAA GTTAAACAGC CTCGTCGGCG TCCTCGAGGC TCCAAAACCA GGCTCTAGGC GGGGACGACT GCAGCCGTTA 000240
000241 TGGAGGCCAC CGCGGCTACG GCCGCGGCTG AGGCCTCCCC AGGTGGAGCG GTGGCCTGGA GGGGAATCTT GATCCTGGGC 000320
000321 CAGCCACCTG TCAAGAGGAG GCGGAGCGTC ATGCCTCTGG AAGACTGGAT GAATATTCTC CAGGAGCCTG ACGAAGGCGA 000400
000401 AGAAGTCTTT GCAGAGGAAA TTGAATGCTG TCTGATGCTA CAATTCATAT GGATCCTTTC CTGGATTGAA GCCTGACTTT 000480
000481 TAAAAAAGGT TTCAATAAAT TGCTTATACC TATGAAGAGA TGCAAAAGAA CCTTCAAAAT AAAGCAAAGG ACTTGAAGAA 000560
000561 AGAGAAGGAA GACATGAAGA AGAGGATGTC ATTTAGGTGA AGGGCCATGC TGGATAAGGA GCTGGCTGCC TCTGTGAACA 000640
000641 TCCTACTCAA GGCATCTTCA CTGCTGTACA TCCTTTTGAA ATCCCAGAGA TCTTCAGTCT CCCTGTGGAT TAAGGAGATG 000720
000721 TGCAGTATTT AAAGTGGCTT CAGGAAGGCA TGGAAGAGGA CTGAGTGGGG AAAGCTTTTT GTGCATGCTG CTGGCTACCT 000800
000801 CCAGCGGCTG CCTCCAGCCT CCATCAGCTG CACTCTGGGG AAGAGGAGGC TGCCTTCTAC CTCCCAGCAT CTCTGGATTT 000880
000881 CATGTTCCTG TCAGCACAGA GGAGCTAAAT GGCCTGTAGA GGCTGAAGGT CTGAGGCTCC TAAAGCTGGA AGAAAAGGCT 000960
000961 GGGCCAGTCA GGCCAAGCAA GAACACAGTG TAACTTGTCT CTGAGTGCTT CATGGTTAAG GGGGCTAAGC AGGCACAAGG 001040
001041 GCATGAGGAT GGTTATATGT ACAGACTGAG GGGAAGAAGC AGTGAAGATG AGACTTGCCA TCTTCTTGAG TCAGTAGGCC 001120
001121 TGCCTCAGGT GCCTAGGATG TAATTGCTCT GCTGCTTCTC ATGGGGAGGA GTGGCCCTCA TGACCTTGTT TACCTGGAAG 001200
001201 AGTGTGGGAT GAATGCCTCC TCCTATGGGG ACTCGCAAGT GCTTTAGCAA AAGGATAAAT TGCTAATTGT GGCATTTCGT 001280
001281 GGATCAGCAG GATTATTTCT CCTTGCTAAA GAGGATTTTG TTGGTCCTGA ATTCTGAGGA GGTGGGACTA GGAATGGGCT 001360
001361 CCATGAGCCT GTGTATGACT CAGGGAATAT TAGGACTTTG GCACAGCCTC ATGGGTTGGG AGTAAGTCTT GGCTCTTCCC 001440
001441 TAGCCTGAAT GACAGACATC AGATCATTCT GGTGCTTTGT CCATGAAGAT GTAGATTCTG AGCCCACCCA ACTAATCTTT 001520
001521 TCACTTGAGC ACAGAAACAG CCCCGGGAAT CGGACAGACC CGTGTCTTTC AGGTTTGCTT CACAGAGCCC CAGGGGTTGA 001600
001601 CAATAGGTGC CTTGGAGACT GCCTGCATGG GGATTTTTAA AAAGCTTTCT TTGTTAAAGG TTTGTAAACC ACTCCTCTGA 001680
001681 GCCTGTTTTC ATTTTATAGA TTATTCAGGG AACTGAACTG CACAGAGATC CAGAAAGTGG GTAGTGCAGG CTGTAGTGCT 001760
001761 GATAACTACT GTACTACTTG GATCTTTGTG CTCCCAAATA CCAAATGGAA GAGGATCTCT GAGAGTCCTT TGCAAAGATC 001840
001841 TTGTAGGGAC TTTAGGCTGG GGCCTTCGGA AAATTCCAGA GGATTCCAAT GGAGATTTTG AGGGACTGAC TCAGAAGAAC 001920
001921 AAAGAGAATG ATAATGGTGA TGTCCCTGCT TTTTACAACA GATCATGTTC TGATATATAT GCAAATCTGT GTAAAGTAAA 002000
002001 CCCTACCTAA AATGTACTGG GGACCCAAGA TGGACTGCCT GTATTGCTTC CAGGATAAAG TCCAATTTCT AGCTCTGGTT 002080
002081 TTTATAACCT TGCTTCAGCT CACCTTTTCC GTCATCATCC CCTCCATCTC CTCTCCCACG CTGGGAAATG GATGGCTGCA 002160
002161 CTATACTGTG TGATGTTATT GCTATGTTCA TGCCATCCCC TCTGCCTGGA ATGCCCTTCT GCATGAATGC CTGTGAAATG 002240
002241 TTGTTGCTCC TTTGTATGGC CTGGCTTCCG TGGTTGGCAG GAATCTCTTC TTTCGTGGTA TTCCTGTCAT CTTTGTGCAT 002320
002321 CACAGTCAGC TTTGTATTCC TAGCTTGTAA GCTACTTGAG GATAGGGGCA TGTCTGAATC TATTTAATCT CTTGCACCTG 002400
002401 TTTGGCAAAT TGATGTTTTA AGTATTTAAA TAACTAAAGC TCTCTCTACA GTACATACTC ACTTTTGATT TATGAATTGG 002480
002481 CAAAATTCAA CTTTTTTCCT TGAATATTCT TAAAGTGAGA TGAATTCCAA AGGAGAGTGT TCTGTGTGTG GCCTTCATTG 002560
002561 AGTGGTTTTC TGTTACCAGA AAGCTCTTGG TGGCCTTCCT CTTCCCTGGT GTCAAGGTTG ACTGTTATAG GAAATGGGAG 002640
002641 GGGAGAGGGC CGTTTCTGCC ACGCATTGTC CTAGGTTCTT AACATTATTT AATCCTTATA ATGCAATGTT ATCCTCATTT 002720
002721 TACAGATGAA ACCTGAGACC AAAGAACATG TAACACATAA AGTACATTGC AGAGTTAGGA TGTGAACCCA ACTCTGATTC 002800
002801 TAAACCTAAT GCTCTCACTC TTTCATTCAG AGGTTCAGTC AGTTCTTTGT AGGCTGTAGA TCCAGAGAAG CTGCCGTAGC 002880
002881 CAACAATGAA GTTGTTAGTT TTTAAAACAT CTATGTGGTA AGTTGGTCTG GCACTTAAAA ATGTATTGTT TCCCAGGCAC 002960
002961 GGTGGTTCAC ACCTGTAATC CCAGCATTTT GGGAGGCCGA GGCAGGCGGA TCATTAGGTC AAAAGATTGA GACCATCCTG 003040
003041 ACCAACATGG TGAAACCCCG TCTCTACTAA AAGTACAAAA ATTAGCTGGG TGTGGTGGCG CATGCCTCTA GTCCCAGCTA 003120
003121 CCTGGGAGGC TGAGGCAGGA GAATTGCTTG AACCCAGGAG GCAGAGGTTG CAGTGAGCCA AGATCATGCT ACTGCACTAC 003200
003201 AGCCTGGCAA CAAAGCGAGA CTCTGTCTAA AATATATATA TATATATATA TTGTTTACTA CTCACCACAG ATCTGCAGGA 003280
003281 GTTCACTGAT CTCTAGGATC TGCCTTAACT CCAACTTACA TGTTTTGGTC ACTATTACAA ACTGTCATCC CAGAATGATG 003360
003361 CTGCAGAGGC TAGGGCTAGG ACACAGACCA GTGTTTCCAT GTGGGAATTC CCTCCCAGTA TTTCTTAGGA AATGTATGTT 003440
003441 TTTTGAATCC ATAATCCCTA GAAAAATCAG TTGAGGAAAT GAGAAGTATT GTAATTATTC TGTGAATAGT AACACTTACC 003520
003521 ATTATGGAGA CATCACTAGT TTGAAAGAAT CCAACTTCAT CAAATATTAA CGTACCGAGT TGAAGGCTAC AAGAACTGAG 003600
003601 ACAGGAGCAT AGCAGAGAGA AACGGTCACC ATCTCATTAG CCCTATTTTT GGTTGTTGTG ATGCCATTAC ATCTGTATAT 003680
003681 CTGGCCATAT CAGCTGCTAA TGGTGAGTTC TTGCAAACAA AATGATTTGA TAAACAACCT ACCATACTTT ATACAAATCT 003760
003761 TATGGTGTTC CGAGAAATAA ACTTTGGAAG CAAAATAAAA AAAAAA
Predicted Small Protein
| Name | PSMD5-AS1_smProtein_2147:2386 |
| Length | 79 |
| Molecular weight | 8676.5997 |
| Aromaticity | 0.101265822785 |
| Instability index | 82.5860759494 |
| Isoelectric point | 4.01751708984 |
| Runs | 9 |
| Runs residual | 0.0263568579851 |
| Runs probability | 0.0582543327641 |
| Amino acid sequence | MDGCTILCDVIAMFMPSPLPGMPFCMNACEMLLLLCMAWLPWLAGISSFVVFLSSLCITV SFVFLACKLLEDRGMSESI |
| Secondary structure | LLLLLHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLHHHEEHHHHHHHHH HHHHHHHHHHHHLLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTTTT TTiiiiiiiiiiiiiiiii |
