TSPOAP1-AS1

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TSPOAP1-AS1 is a lncRNA that may potentially serve as a novel candidate biomarker for the identification of breast cancer (BC) patients at high risk for tumor recurrence.

Name

TSPOAP1-AS1: TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 (HGNC nomenclature).

Function

TSPOAP1-AS1 is one of the five-lncRNA signature that is involved in BC metastasis-related pathways. Findings indicate that these five lncRNAs may be involved in BC pathogenesis, and also, these lncRNAs may potentially present as novel candidate biomarkers for the identification of BC patients at high risk for tumor recurrence [1].

Diseases

  • Breast Cancer (BC) [1]

Expression

TSPOAP1-AS1, is a lncRNA whose high expression is associated with better prognosis in breast cancer patients [1].

Labs working on this lncRNA

  • College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China. [1]
  • Division of Biostatistics, Department of Public Health Sciences, University of Miami Miller School of Medicine, Miami, FL. [1]
  • University of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Miami, FL. [1]
  • Key Laboratory of Cardiovascular Medicine Research, Harbin Medical University, Ministry of Education, China. [1]

References

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Li J, Wang W, Xia P, Wan L, Zhang L, Yu L, Wang L, Chen X, Xiao Y, Xu C. Identification of a five‐lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients. International journal of cancer. 2018.

Sequence

>gi|100506779|ref|NR_038410.1| Homo sapiens TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1, long non-coding RNA

000001 ATTAACATCT TGTCTGCATC CCACAACAGG CAGATGGCCC TGTGCAGGGC TGAGCTGGAA GAGGTGACCA GGGCCTCCTC 000080
000081 GCACCTTGCC CACCAGAGTG AGCCTGGCCT GCAGCTCCCT GCACTCCCGC TGCAAGGCAG CAATCTGCTT GTCCTTGGCC 000160
000161 AGCAGTGCAC TGGCTGTCTC ACTGAGGTCC CGGGCTCGCT GGCGGGCTAG GGCCTTCCGA CACAACTCCA AGCTGGTCCC 000240
000241 CGGCCGGGGC AAGGGGGCAC TCACCTAGCC AGAGGAGGGG TTGGCTGAGC TCTTCCCCAC CCACAAAGGA GGCTGCAGAA 000320
000321 GGCGCCAGGG CTGCTGGAGC TGGAGCCAGG GCCTCCTGCC CCCAACAGGA TTCCTCACAT CCCAGGACCA GCTGGAAAAG 000400
000401 GTGGTGAGAG TTGGAAAGAG ACTGCTCAGT GAGGACTGCC CTGCGAACCA GCTTGGATTC ATCCCGTTCA CCTCCACGTT 000480
000481 CTGCACTCGG GGCCGAGGGA AGGGAGGCAG CCCAGGCAGC TAGAGAACTT GATGAAACAC ACTCAATCTG AATCTCGCTT 000560
000561 GATCGTCATG CTGACCCAGT GAGGGTCAGG CATCCTTTCC GACTACTCAC TCAGCAGCGG ATCCCCACCC GCCTCTGACT 000640
000641 CCCAGTGTCT TTCGGCTCCA ACGTAAGTTC ACCGAACGTC TAAGAGCTGA GGATTCAAAG GCATGTAAGA CCGCCCCTGC 000720
000721 CCTCAGCTGC AAGACCTGTC CGCGATCCTA CGAGCCCCAT TCCGCCCTCT TTCCCCGACC TTGGTCCCCC ATGGGCCCTA 000800
000801 CAACCAGGTC CCCGACTGAC ACCTTGACCA GCGAACACAG CAAACAGGCC CGCAGATGCC GCAGGTCCTT CGGCACCGTC 000880
000881 TCCAGGGCCA TCTTCGCCGA TGGGAAGAAC AACAGGGAGA TAGACGACCA CAGCCTGTGC ACCCGCAGGA AGTAAATAGC 000960
000961 TCGTTACCCA GAATGCCCAC CACTTCCGGC GCTTAGACTT CCTCTTCCGG TGTGGGCGGA CGCCAGCTCC GCCCCTACCC 001040
001041 CCGCCAGAGG AGATGGTTTC TCCCGCCAGC AGGCGGGGAG GCTGGGCGGC CGGCCGCCAC CTGGGCCGGA GCGCGTCGCA 001120
001121 GCCACCTGAG CCCGCCGAGG GCGCGGCGGA GGCTGTGTGG GGTAGTCAGC GGGCCCCCGG GGCGGGGGGG CGGCTGCGCT 001200
001201 TGCGCGGGAG TGTGTCGGGC TGAGCCGCAG CGCCGAGACG CGGGCTGTTT GATCTGGGCT GGTGGCCCTG GGCGTCGGTC 001280
001281 CTGTTCCCCG ATGGTAACCC GAAGTTTGTT TTTTTTTGTT TTGTCTCCCC GTTTTAGAAG CATTGGGGGC AGTGAATCCA 001360
001361 CTGTCTCCCT CTGGATTGTC TCTGCAGAGA CCGAGAAGAA ATCCAGGGAC AGCCCCACCC CTCCTTCCTA ACTGCGAGAG 001440
001441 CGCTATAGGG TTTCCACTTG CTTCCCACAG GAATGCTGGC CTGGGAGCTA CGGCGGAAAA AAATGCGTAT TTATCTTTTA 001520
001521 AAACTCCGTC TGTTTGCTCG TTCCGGCTGA TAATTTATAC TTTGCGCAGT TCTTAGCGCT TAGACACGGT TCCTTTACTA 001600
001601 AAGACCATTT GTAGGAGATT AGGTGTCCTT TTTTTCCCTT TCATTTCACC GTCTAGGAAG CGAAATGCCT TGTTCTATAG 001680
001681 GCACTAAACC ACCACCCCTA CCAAACCTTT CTCGGGGAAG CAGAAGGGGA ACTTGTGCCT TGTGAGGAAG CGACAAAGGC 001760
001761 CCCTTCTGGC CCTGGAGACT TCACGCCAAT GGAGCACCAG CTCTCTGTCC TCGCAATAGC CCGAGTGCAG GCAGAACGCA 001840
001841 GTCATTTGTG TTTATCTGAG AGGAGCTTTG GGATATAAAT AGTTTCAGGC CCCGCTGCGC TGTCATTCCA GCCCAGCCTC 001920
001921 CTGATTGAGC TGCTTCCGGG CGGGCTTTCT TCTTGTTGGC GGTCCCATGC TGTGTTCAGA TGGGCTCTGT GACAGGTTTG 002000
002001 GATGTTTTCT ATCACTGAAT AAAACTTTCC ACTTTGGAAC ATATTTTCTA CACTCTATTA TCTCATGTAA GTCCTGCAAC 002080
002081 AACTATTAAG TAGGCCCATT TTATGGACTG AAAAAGCGAG GCACAGAGTA TTTGCCCAAG GTCTGAGTCA CTGAAGTATG 002160
002161 ATAATGTGTG AAGTGAACAG TATAATAATA ATGACTGAAG CACAGTAAGA ATCCAGTCAT GCTTTCTCCT TCCCTGATCT 002240
002241 CACTAAGCCA CACTTTTAGG GGCTTACAAA CCAGTTCTTA TTGCCAAGCC CTCTACTCTA CCCTATCCTT TCATGAATCG 002320
002321 GAGCCTAGCC TCTGATAACA TAAATAATTT ACTTCTCTTG ATGTAGAAAG AGATGACGTT GTTACCCTGA GTGACAGTCA 002400
002401 CGACAGAACA AAACCACAAG ACCAGACCAC ATTTGTGGAT AAATATATTA GCAAATAAAT ATATTTCTTA ACATAGTGCC 002480
002481 TGAAAAAAAA AAAAAAAAAA
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