ENST00000436974.1
Revision as of 08:38, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000436974.1 |
Source |
Gencode19 |
Same with |
lnc-TNFSF4-1:1,NONHSAT007626 |
Classification |
intergenic |
Length |
690 nt |
Genomic location |
chr1-:173143439..173144642 |
Exon number |
2 |
Exons |
173143439..173143713,173144228..173144642 |
Genome context |
|
Sequence |
000001 GAAAAAAATC AAGGAATGGA TAATATAAGA GCCTTTCAAG AATGTAGATT TACACTAGAG ATTTATTAAA TTTGAGGGCC 000080
000081 TATAACAAAA TTAATTTATT TAAACAAATA TTTGTTAAAA ATTCTTTTAT AAAGTACCTG CCACTGTGTT AGGTGTTCTG 000160 000161 GGGAATCTGA GAGAAATAGA AAGACACTAG AATAATATGG TTGGTCTAAA GCACTCAAGA TTTAGAATCA ATGGAGGCTT 000240 000241 GTGTTCAAGT TGAGATTTTA CCACCACTTA TCAGCTGTAT CCTCTGGTTT TACTTAATTG TAGGTCTACT GATCACTGCC 000320 000321 TTCCCTGCTC TGCCATCATA CAAATTATCT CATAGGATTG TTTTGAGGAT TAAACAAAAC ACCAACCACG GGTCACAGAT 000400 000401 TATGACATTT TCAAGAAGGA CACGTTTGCT TCCCCTGCCA CCATTGTAAG TTTCCCAATG CCTCCCCAGC CCTGCAGAAC 000480 000481 TGTGAGCCAG TTAAACCTCT TTCCTCTATA AATTACCTAG TCTCGGGCAG TTCTTTATAG CAGCATGAGA ATGGACTAAT 000560 000561 ACAGTAAACT GGTACCACAG AGAGTGGGGT GCTACTGTAA AGATACATGA AAATGTGGAA GTTACTTTGG AACTGGGTAA 000640 000641 CAGGTAGAGG TTGGAACAGT TTGGAGGGCT CAGAAGACAG GAAAATGTGG |
Predicted Small Protein
Name | ENST00000436974.1_smProtein_230:448 |
Length | 73 |
Molecular weight | 8242.9217 |
Aromaticity | 0.0833333333333 |
Instability index | 68.2890277778 |
Isoelectric point | 10.0479125977 |
Runs | 9 |
Runs residual | 0.0159164639092 |
Runs probability | 0.0743979273392 |
Amino acid sequence | MEACVQVEILPPLISCILWFYLIVGLLITAFPALPSYKLSHRIVLRIKQNTNHGSQIMTF SRRTRLLPLPPL |
Secondary structure | LEEEEEEEELLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLEEEEEEEELLLLLEEEEEE EEEEELLLLLLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLL |
PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiii |